Browse Element(s) Details


OsAffx.17189.1.S1_at

Description tigr:9636.m02712
TID=OsAffx.17189.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2744011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27410Os.45902.1.A1_x_at3/118+16596398..16599892Zinc knuckle family protein
LOC_Os08g27410OsAffx.10222.1.S1_x_at2/118+16596398..16599892Zinc knuckle family protein
LOC_Os08g27410Os.56372.1.S1_at1/118+16596398..16599892Zinc knuckle family protein
LOC_Os08g27420Os.26886.3.S1_x_at1/118+16604038..16606278transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27430NANA8+16612194..16613499hypothetical protein
LOC_Os08g27440OsAffx.17189.1.S1_at11/118+16616850..16618716hypothetical protein
LOC_Os08g27450Os.27037.1.A1_at1/118+16621544..16624867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27460NANA8+16625031..16633162transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27470NANA8+16634211..16634522hypothetical protein
LOC_Os08g27480OsAffx.14941.1.S1_at11/118+16641694..16642639hypothetical protein
LOC_Os08g27480OsAffx.14941.1.S1_s_at8/118+16641694..16642639hypothetical protein
LOC_Os08g27490OsAffx.14941.4.S1_at11/118+16643638..16647767hypothetical protein
LOC_Os08g27490OsAffx.14941.4.S1_s_at11/118+16643638..16647767hypothetical protein
LOC_Os08g27490OsAffx.25952.1.S1_s_at1/118+16643638..16647767hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17189.1.S1_at--726--6091Chr08:16618211..16618235 (25 bp)
GAGTCAGAGTCGTGCTCGGTGTTTC
LOC_Os08g27440
OsAffx.17189.1.S1_at--875--9631Chr08:16618214..16618238 (25 bp)
TCAGAGTCGTGCTCGGTGTTTCGGC
LOC_Os08g27440
OsAffx.17189.1.S1_at--1039--9371Chr08:16618247..16618271 (25 bp)
TCGAGGTGGCGACGAACTCTTCATC
LOC_Os08g27440
OsAffx.17189.1.S1_at--699--7191Chr08:16618329..16618353 (25 bp)
GTCGGTGGGTACGTCGCGGTTAGCG
LOC_Os08g27440
OsAffx.17189.1.S1_at--796--6771Chr08:16618347..16618371 (25 bp)
GTTAGCGTCGCTGTGGGTGCCATCT
LOC_Os08g27440
OsAffx.17189.1.S1_at--110--8611Chr08:16618394..16618418 (25 bp)
TGGTGGCGTTGGCTGGCGTTGGCGT
LOC_Os08g27440
OsAffx.17189.1.S1_at--1162--4031Chr08:16618410..16618434 (25 bp)
CGTTGGCGTGTGTACTGTGCTCGAC
LOC_Os08g27440
OsAffx.17189.1.S1_at--578--5051Chr08:16618523..16618547 (25 bp)
GCAGCAGTCGGCTCGTCATCAACAT
LOC_Os08g27440
OsAffx.17189.1.S1_at--1122--7871Chr08:16618612..16618636 (25 bp)
GGTTCCACGTTGCAGGTCACCCTCT
LOC_Os08g27440
OsAffx.17189.1.S1_at--244--3331Chr08:16618617..16618641 (25 bp)
CACGTTGCAGGTCACCCTCTTCTTA
LOC_Os08g27440
OsAffx.17189.1.S1_at--1025--9291Chr08:16618648..16618672 (25 bp)
TCCGCCCTCATAGCAAGACAGAAGT
LOC_Os08g27440
Target Sequence 
GAGTCAGAGTCGTGCTCGGTGTTTCGGCGGCCGTCGTCGAGGTGGCGACGAACTCTTCATCGTGCTCGGCGCTACGGCGG
CCCTCGCCTCGCTTCGCCGTGCCCGTGTTGGCGGTGCCGTCGGTGGGTACGTCGCGGTTAGCGTCGCTGTGGGTGCCATC
TCCCTCCGTCGCGCTTGTGCTGGTGGTGGCGTTGGCTGGCGTTGGCGTGTGTACTGTGCTCGACGGTGCGGCGGTTGTCG
CCTCCCGTGCTCCCGTCGCCATCAGTGCGCTAGCCGGCGCTGCCCCTGGTGCAGATTCTTCCTCTGTTGGCGGCAGCAGT
CGGCTCGTCATCAACATCCTCCTTCAAGCCGACGCCTTTGGGATTCTTGTGACTGGGTGTTTGATCTGCTCAGAGTCTTG
TGGTTCCACGTTGCAGGTCACCCTCTTCTTAGCCATCTCCGCCCTCATAGCAAGACAGAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17189.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis