Browse Element(s) Details


OsAffx.14957.1.S1_at

Description tigr:9633.m03185
TID=OsAffx.14957.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cytochrome p450 51 (ec 1.14.13.70) (cypl1) (p450-l1a1) (obtusifoliol 14-alpha demethylase). (sorghum, sorghum vulgare)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3438011/11Cytochrome P450 51, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34340NANA5+20270714..20272296retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g34350Os.31535.1.A1_at5/115+20274409..20281035transposon protein, putative, unclassified
LOC_Os05g34350Os.50591.1.S1_at3/115+20274409..20281035transposon protein, putative, unclassified
LOC_Os05g34350OsAffx.22945.1.S1_at1/115+20274409..20281035transposon protein, putative, unclassified
LOC_Os05g34360NANA5+20282112..20282456hypothetical protein
LOC_Os05g34370OsAffx.31069.1.S1_x_at1/115+20283113..20285164retrotransposon protein, putative, unclassified
LOC_Os05g34380OsAffx.14957.1.S1_at11/115+20296312..20297966Cytochrome P450 51, putative
LOC_Os05g34390OsAffx.27157.1.S1_at9/115+20300884..20307630S-locus glycoprotein family protein
LOC_Os05g34390Os.55243.1.S1_at1/115+20300884..20307630S-locus glycoprotein family protein
LOC_Os05g34400OsAffx.27158.1.S1_at11/115+20309959..20310694hypothetical protein
LOC_Os05g34410Os.47463.1.S1_x_at1/115+20312725..20313656transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g34410Os.14491.2.S1_x_at1/115+20312725..20313656transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g34420NANA5+20314032..20316458transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g34429NANA5+20317032..20317464NA
LOC_Os05g34440Os.46306.1.S1_x_at3/115+20318570..20322355transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009686biological_processgibberellic acid biosynthesis
GO:0016126biological_processsterol biosynthesis
GO:0005783cellular_componentendoplasmic reticulum
GO:0008398molecular_functionsterol 14-demethylase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14957.1.S1_at--271--8531Chr05:20297388..20297412 (25 bp)
TGGACTGGAGCATGCCTACTAACTC
LOC_Os05g34380
OsAffx.14957.1.S1_at--1144--3211Chr05:20297417..20297441 (25 bp)
CAAGTTCTTGACAGAGGCACTCGAT
LOC_Os05g34380
OsAffx.14957.1.S1_at--5--6511Chr05:20297499..20297523 (25 bp)
GATATGGACATCTTGCACTGCTGCA
LOC_Os05g34380
OsAffx.14957.1.S1_at--686--2911Chr05:20297526..20297550 (25 bp)
AAGGAGGCCCTAAGGATGCACCCTG
LOC_Os05g34380
OsAffx.14957.1.S1_at--99--6331Chr05:20297540..20297564 (25 bp)
GATGCACCCTGTGGCGCCAATAATA
LOC_Os05g34380
OsAffx.14957.1.S1_at--601--8271Chr05:20297632..20297656 (25 bp)
GGCATAATTTACTGAGCCCAATGAT
LOC_Os05g34380
OsAffx.14957.1.S1_at--502--51Chr05:20297657..20297681 (25 bp)
ATTCAACAACAGACTACCCTACATT
LOC_Os05g34380
OsAffx.14957.1.S1_at--685--2911Chr05:20297685..20297709 (25 bp)
AAGGATCCCCATATGTATGACCCAG
LOC_Os05g34380
OsAffx.14957.1.S1_at--565--6891Chr05:20297699..20297723 (25 bp)
GTATGACCCAGATAGGTTTGCTCCT
LOC_Os05g34380
OsAffx.14957.1.S1_at--709--8271Chr05:20297748..20297772 (25 bp)
GGCATGTTCTCTTATACATCGTTTG
LOC_Os05g34380
OsAffx.14957.1.S1_at--952--5571Chr05:20297861..20297885 (25 bp)
GAAATTGGAGTCTCCTTTCCCTAAG
LOC_Os05g34380
Target Sequence 
TGGACTGGAGCATGCCTACTAACTCATGACAAGTTCTTGACAGAGGCACTCGATGAGCAAAAGCATATGATTCAAAAACA
TGGAGACCATATAGATTATAATGTGTTGTTAGATATGGACATCTTGCACTGCTGCATCAAGGAGGCCCTAAGGATGCACC
CTGTGGCGCCAATAATATATCGCAAGGCACAAAAATCATTTGTTGTAAGGACGAGAGAAGGCGATGCATATGACATTCCA
GAAGGGCATAATTTACTGAGCCCAATGATATTCAACAACAGACTACCCTACATTTATAAGGATCCCCATATGTATGACCC
AGATAGGTTTGCTCCTAAAAGAGAGGAGGATAAAGTTGGTGGCATGTTCTCTTATACATCGTTTGGTGGTGGGAGGCATA
TTTGCATTGGTGAGGCTTATGCTTATATGCAAATTAAGGTGATATGGAGTCATTTACTAAGGAACTTTGAGTTGAAATTG
GAGTCTCCTTTCCCTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14957.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis