Browse Element(s) Details


OsAffx.15001.1.S1_at

Description tigr:9633.m03498
TID=OsAffx.15001.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3784011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g37800Os.51914.1.A1_at11/115+22056861..22059120expressed protein
LOC_Os05g37810OsAffx.15200.2.S1_x_at11/115+22066811..22067634hypothetical protein
LOC_Os05g37810OsAffx.15200.2.S1_at11/115+22066811..22067634hypothetical protein
LOC_Os05g37810OsAffx.15200.3.S1_s_at4/115+22066811..22067634hypothetical protein
LOC_Os05g37820Os.9560.1.S1_at11/115+22072792..22076529Major Facilitator Superfamily protein, expressed
LOC_Os05g37830Os.14077.1.S1_at10/115+22077057..22079140expressed protein
LOC_Os05g37840OsAffx.15001.1.S1_at11/115+22080338..22080862hypothetical protein
LOC_Os05g37849NANA5+22090874..22091295NA
LOC_Os05g37860NANA5+22091550..22093565hypothetical protein
LOC_Os05g37870NANA5+22096464..22098263hypothetical protein
LOC_Os05g37880Os.48933.1.S1_at11/115+22100994..22105933Plant protein family protein, expressed
LOC_Os05g37880OsAffx.4551.1.S1_at9/115+22100994..22105933Plant protein family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15001.1.S1_at--1006--10731Chr05:22080373..22080397 (25 bp)
TTGCAACAGGGCCGGTATTGTCGAA
LOC_Os05g37840
OsAffx.15001.1.S1_at--325--8511Chr05:22080520..22080544 (25 bp)
TGGCAGCCAGCAGGTCACGGCTGTA
LOC_Os05g37840
OsAffx.15001.1.S1_at--506--5011Chr05:22080529..22080553 (25 bp)
GCAGGTCACGGCTGTAGCCACAGAT
LOC_Os05g37840
OsAffx.15001.1.S1_at--995--1931Chr05:22080536..22080560 (25 bp)
ACGGCTGTAGCCACAGATGATACTA
LOC_Os05g37840
OsAffx.15001.1.S1_at--419--9991Chr05:22080543..22080567 (25 bp)
TAGCCACAGATGATACTACCAATGC
LOC_Os05g37840
OsAffx.15001.1.S1_at--921--711Chr05:22080552..22080576 (25 bp)
ATGATACTACCAATGCTGGAGGAGA
LOC_Os05g37840
OsAffx.15001.1.S1_at--912--971Chr05:22080571..22080595 (25 bp)
AGGAGAAGGCAGCATAGAGGCTCAT
LOC_Os05g37840
OsAffx.15001.1.S1_at--283--4231Chr05:22080625..22080649 (25 bp)
CCGACGTGGTCGGAAGGCTATGCTA
LOC_Os05g37840
OsAffx.15001.1.S1_at--519--9451Chr05:22080736..22080760 (25 bp)
TCGGCGTCATCGCTATGTGCCCATG
LOC_Os05g37840
OsAffx.15001.1.S1_at--905--4011Chr05:22080740..22080764 (25 bp)
CGTCATCGCTATGTGCCCATGTGGG
LOC_Os05g37840
OsAffx.15001.1.S1_at--390--8051Chr05:22080803..22080827 (25 bp)
GGAGAAGAAAGAGCCGGTGACACTA
LOC_Os05g37840
Target Sequence 
TTGCAACAGGGCCGGTATTGTCGAAGGGGAGGGTGGCAGCCAGCAGGTCACGGCTGTAGCCACAGATGATACTACCAATG
CTGGAGGAGAAGGCAGCATAGAGGCTCATGGGGAGAGAGCGATGGCGGCGACGGAACCCCGACGTGGTCGGAAGGCTATG
CTAGGGGCCGCTCCCCTTCCTTCTACCATGCCTTCTCCTTCGCTCCTGGCCCGCCAAAGCCGTCAACCACCATTCCCCAA
TCGAGCTCGTCGGCGTCATCGCTATGTGCCCATGTGGGGAAAGGAAAAGAGGACAAAGGAACATAAAAGGATGAGAGGAG
AAGAAAGAGCCGGTGACACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15001.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis