Browse Element(s) Details


OsAffx.15036.1.S1_s_at

Description tigr:9633.m03749
TID=OsAffx.15036.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4019011/11Thioredoxin family protein, expressed
LOC_Os09g231501/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40140OsAffx.4571.1.S1_at11/115+23491852..23493428retrotransposon protein, putative, unclassified
LOC_Os05g40150OsAffx.27252.1.S1_at11/115+23498045..23502194NB-ARC domain containing protein
LOC_Os05g40160Os.50474.1.S1_at11/115+23503562..23507180NB-ARC domain containing protein, expressed
LOC_Os05g40170Os.4820.1.S1_at11/115+23509834..23512004expressed protein
LOC_Os05g40180OsAffx.27253.1.S1_x_at11/115+23515822..23517941Protein kinase domain containing protein, expressed
LOC_Os05g40180Os.51130.1.S1_at11/115+23515822..23517941Protein kinase domain containing protein, expressed
LOC_Os05g40190OsAffx.15036.1.S1_s_at11/115+23517742..23521841Thioredoxin family protein, expressed
LOC_Os05g40190Os.51130.2.S1_at11/115+23517742..23521841Thioredoxin family protein, expressed
LOC_Os05g40190Os.52273.1.S1_at10/115+23517742..23521841Thioredoxin family protein, expressed
LOC_Os05g40190OsAffx.15036.1.S1_at10/115+23517742..23521841Thioredoxin family protein, expressed
LOC_Os05g40200Os.48975.1.S1_at10/115+23522217..23527785leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os05g40220Os.47852.1.S1_at11/115+23539525..23543828retrotransposon protein, putative, unclassified, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005829cellular_componentcytosol
GO:0003824molecular_functioncatalytic activity
GO:0005489molecular_functionelectron transporter activity
GO:0016671molecular_functionoxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor
GO:0016787molecular_functionhydrolase activity
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15036.1.S1_s_at--549--6191Chr05:23518809..23518833 (25 bp)
GAGGACACTTGCATCTTGACGAATT
LOC_Os05g40190
OsAffx.15036.1.S1_s_at--613--3131Chr05:23518788..23518812 (25 bp)
AATTTTCTCAAGTCGATGGGTTGCT
LOC_Os05g40190
OsAffx.15036.1.S1_s_at--871--1951Chr05:23518590..23518614 (25 bp)
ACTGTAGACGCCGAGGAGCACCTGG
LOC_Os05g40190
OsAffx.15036.1.S1_s_at--284--4071Chr05:23518579..23518603 (25 bp)
CGAGGAGCACCTGGACTACAGTGGC
LOC_Os05g40190
OsAffx.15036.1.S1_s_at--627--8151Chr05:23518554..23518578 (25 bp)
GGAAATGTGACTTTGGTAACTGATC
LOC_Os05g40190
OsAffx.15036.1.S1_s_at--888--5191Chr05:23518377..23518401 (25 bp)
GCAATTTGGTGCACTCCGTGTAGGA
LOC_Os05g40190
OsAffx.15036.1.S1_s_at--241--7411Chr05:23518360..23518384 (25 bp)
GTGTAGGAATGCTGCCCCTCTATTC
LOC_Os05g40190
OsAffx.15036.1.S1_s_at--893--4291Chr05:23518344..23518368 (25 bp)
CCTCTATTCGCTGAACTTTCACTGA
LOC_Os05g40190
OsAffx.15036.1.S1_s_at--118--3332Chr09:13697353..13697372 (20 bp)
CACTGAAGTATCCTGACATTGTTTT
LOC_Os09g23150
OsAffx.15036.1.S1_s_at--870--3591Chr05:23518309..23518333 (25 bp)
CATTGTTTTCGTGTCCGTGGATGTA
LOC_Os05g40190
OsAffx.15036.1.S1_s_at--1093--2571Chr05:23518128..23518152 (25 bp)
AACCCCAACGTTCATCTTCATGAAA
LOC_Os05g40190
Target Sequence 
GAGGACACTTGCATCTTGACGAATTTTCTCAAGTCGATGGGTTGCTGTGGCAGCAGCACTGTAGACGCCGAGGAGCACCT
GGACTACAGTGGCGGAAATGTGACTTTGGTAACTGATCAAAAGAATTGGGACAATACAATGGAAGAAGTAGCTGAGCATG
GCAAAACAGTTGTGCTAAAATTCAGTGCAATTTGGTGCACTCCGTGTAGGAATGCTGCCCCTCTATTCGCTGAACTTTCA
CTGAAGTATCCTGACATTGTTTTCGTGTCCGTGGATGTAGACGAAATGCCGATAACAAAGATGAATGGCATTTTTACTTT
GATTCGTCAGGAGCTGGTGACGCAATACGATGTGCGTGCAACCCCAACGTTCATCTTCATGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15036.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis