Browse Element(s) Details


OsAffx.15069.1.S1_at

Description tigr:9633.m03963
TID=OsAffx.15069.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=S-locus glycoprotein family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g547405/11retrotransposon protein, putative, unclassified
LOC_Os05g251404/11retrotransposon protein, putative, unclassified
LOC_Os01g383401/11retrotransposon protein, putative, unclassified
LOC_Os07g129501/11transposon protein, putative, Mutator sub-class
LOC_Os12g244501/11retrotransposon protein, putative, unclassified, expressed
LOC_Os05g255701/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54700Os.10955.1.S1_at11/112+33487552..33489978RNA recognition motif family protein, expressed
LOC_Os02g54710Os.32465.1.S1_at11/112+33490132..33492293expressed protein
LOC_Os02g54720OsAffx.24870.1.S1_at11/112+33496773..33499893hypothetical protein
LOC_Os02g54730Os.47600.1.S1_s_at11/112+33506102..33511848Transmembrane amino acid transporter protein, expressed
LOC_Os02g54730Os.47600.2.S1_x_at10/112+33506102..33511848Transmembrane amino acid transporter protein, expressed
LOC_Os02g54740OsAffx.15069.1.S1_at5/112+33512656..33517341retrotransposon protein, putative, unclassified
LOC_Os02g54740OsAffx.13657.1.S1_at1/112+33512656..33517341retrotransposon protein, putative, unclassified
LOC_Os02g54750NANA2+33520186..33520692retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g54760OsAffx.3074.1.S1_at11/112+33524761..33528832Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os02g54760Os.10910.1.A1_at11/112+33524761..33528832Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os02g54760Os.22706.1.S1_at7/112+33524761..33528832Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os02g54760OsAffx.15320.1.S1_x_at1/112+33524761..33528832Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os02g54770Os.6615.2.S1_at11/112+33535993..33540665RNA recognition motif family protein, expressed
LOC_Os02g54770Os.6615.2.S1_x_at11/112+33535993..33540665RNA recognition motif family protein, expressed
LOC_Os02g54770Os.6615.1.S1_at11/112+33535993..33540665RNA recognition motif family protein, expressed
LOC_Os02g54780Os.49865.1.S1_at11/112+33541427..33544549Protein CYPRO4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15069.1.S1_at--543--8792Chr05:24601170..24601194 (25 bp)
TGTTCTTAAAAATCTGTGTGCTGGC
NONE
OsAffx.15069.1.S1_at--410--10412Chr05:24601202..24601226 (25 bp)
TTTTGTGGCATTGCAAGCCTCCTAG
NONE
OsAffx.15069.1.S1_at--607--4311NONE
GCCTCCTAGAGGATCAAACTAACTG
NONE
OsAffx.15069.1.S1_at--750--9291Chr05:24602785..24602975 (25 bp)
TCCCAGGCCGGAGTTACAGATGTCT
NONE
OsAffx.15069.1.S1_at--731--7171Chr05:24602972..24602996 (25 bp)
GTCTGGTTGGAAATTTACTTGGGCA
NONE
OsAffx.15069.1.S1_at--101--6474Chr05:24603030..24603054 (25 bp)
GATAGGGTTTTAATGTCCACGGAGT
NONE
OsAffx.15069.1.S1_at--395--10356Chr05:24603071..24603095 (25 bp)
TTTATCTTCTGTGGTGGCTCTTAAT
NONE
OsAffx.15069.1.S1_at--1001--198Chr12:13950201..13950627 (25 bp)
ATTTCTGATCATACTCCTTTACTTT
LOC_Os12g24450
OsAffx.15069.1.S1_at--386--2474Chr05:24603135..24603159 (25 bp)
AACACTTCTTCTTTGAGTAATGCTC
NONE
OsAffx.15069.1.S1_at--454--5492Chr05:24603177..24603201 (25 bp)
GAACTTGGTTGGCTTTTATGTGATG
NONE
OsAffx.15069.1.S1_at--413--7511Chr05:24603266..24603290 (25 bp)
GTGGCAGGCAAAAATTCGTCGTTTA
NONE
Target Sequence 
TGTTCTTAAAAATCTGTGTGCTGGCAAAGAATTTTTGTGGCATTGCAAGCCTCCTAGAGGATCAAACTAACTGGCACGCC
CGCATCTCATCAATCTTTGGACCTGCACAGGAGCTAAGCAGATCTCCCAGGCCGGAGTTACAGATGTCTGGTTGGAAATT
TACTTGGGCAAACAATTTAGTGAATCCAACATATGAGAAACTTGATAGGGTTTTAATGTCCACGGAGTGGGAACATAAAT
TTCCTTTATCTTCTGTGGTGGCTCTTAATAGAGATATTTCTGATCATACTCCTTTACTTTTAAATACAAACACTTCTTCT
TTGAGTAATGCTCAACATAGTTTCAAGTTTGAACTTGGTTGGCTTTTATGTGATGGCTTTGTTGATATGGTAAAGGAGAT
ATGGTCTAGTGTTGATGAAGGCAATTCTGCCATGGAGCAGTGGCAGGCAAAAATTCGTCGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15069.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis