Browse Element(s) Details


OsAffx.15089.1.S1_at

Description tigr:9633.m04073
TID=OsAffx.15089.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g437507/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43709NANA5+25323958..25324392NA
LOC_Os05g43720NANA5+25329588..25330037transposon protein, putative, unclassified
LOC_Os05g43730NANA5+25334531..25340487retrotransposon protein, putative, unclassified
LOC_Os05g43740NANA5+25341655..25344451retrotransposon protein, putative, unclassified
LOC_Os05g43750OsAffx.15089.1.S1_at7/115+25348637..25349321hypothetical protein
LOC_Os05g43760Os.5286.1.S1_at11/115+25353153..25355496TCP family transcription factor containing protein, expressed
LOC_Os05g43770Os.18433.1.S1_at11/115+25363694..25369207NLI interacting factor-like phosphatase family protein, expressed
LOC_Os05g43770Os.18433.1.S1_s_at10/115+25363694..25369207NLI interacting factor-like phosphatase family protein, expressed
LOC_Os05g43780OsAffx.27296.1.S1_at11/115+25370570..25373591hydroxyproline-rich glycoprotein family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15089.1.S1_at--633--2671Chr05:25348674..25348696 (23 bp)
AAGCGCTGTCGCTGGCAGCCGTCTG
LOC_Os05g43750
OsAffx.15089.1.S1_at--548--4731NONE
GCTGTCGCTGGCAGCCGTCTGCTGC
NONE
OsAffx.15089.1.S1_at--180--8511NONE
TGGCAGCCGTCTGCTGCTCTACTGT
NONE
OsAffx.15089.1.S1_at--814--5071NONE
GCAGCCGTCTGCTGCTCTACTGTTG
NONE
OsAffx.15089.1.S1_at--701--1671NONE
AGCCGTCTGCTGCTCTACTGTTGCT
NONE
OsAffx.15089.1.S1_at--873--9112Chr05:25349237..25349261 (25 bp)
TGCTGCTTGTGCTACAGTACCATTG
LOC_Os05g43750
OsAffx.15089.1.S1_at--384--4771Chr05:25349238..25349262 (25 bp)
GCTGCTTGTGCTACAGTACCATTGA
LOC_Os05g43750
OsAffx.15089.1.S1_at--390--1191Chr05:25349252..25349276 (25 bp)
AGTACCATTGAATTCATGTATCTGC
LOC_Os05g43750
OsAffx.15089.1.S1_at--1094--111Chr05:25349263..25349287 (25 bp)
ATTCATGTATCTGCATATGGACGTT
LOC_Os05g43750
OsAffx.15089.1.S1_at--443--9611Chr05:25349265..25349289 (25 bp)
TCATGTATCTGCATATGGACGTTGC
LOC_Os05g43750
OsAffx.15089.1.S1_at--237--751Chr05:25349267..25349291 (25 bp)
ATGTATCTGCATATGGACGTTGCTA
LOC_Os05g43750
Target Sequence 
AAGCGCTGTCGCTGGCAGCCGTCTGCTGCTCTACTGTTGCTGCTGCTGCTTGTGCTACAGTACCATTGAATTCATGTATC
TGCATATGGACGTTGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15089.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis