Browse Element(s) Details


OsAffx.15093.1.S1_s_at

Description tigr:9633.m04087
TID=OsAffx.15093.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=oxidoreductase, 2OG-Fe(II) oxygenase family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4388011/11oxidoreductase, 2OG-Fe oxygenase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43840Os.12680.1.S1_at11/115+25406143..25408396CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os05g43850Os.10160.1.S1_at11/115+25414129..25418428Tub family protein, expressed
LOC_Os05g43860Os.15784.1.A1_s_at11/115+25419871..25422735expressed protein
LOC_Os05g43860OsAffx.15091.1.S1_at9/115+25419871..25422735expressed protein
LOC_Os05g43870OsAffx.15092.1.S1_at11/115+25424969..25427337expressed protein
LOC_Os05g43880OsAffx.15093.1.S1_x_at11/115+25431847..25432998oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os05g43880OsAffx.15093.1.S1_s_at11/115+25431847..25432998oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os05g43890OsAffx.15095.1.S1_at11/115+25443704..25444056hypothetical protein
LOC_Os05g43900NANA5+25455034..25455941hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045487biological_processgibberellic acid catabolism
GO:0045543molecular_functiongibberellin 2-beta-dioxygenase activity
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15093.1.S1_s_at--1028--8371Chr05:25432185..25432209 (25 bp)
GGCGACCACCAGTGGGTCACCGTCC
LOC_Os05g43880
OsAffx.15093.1.S1_s_at--1076--4131Chr05:25432121..25432145 (25 bp)
CGCTGCAGGTGATGACGAACGGGAG
LOC_Os05g43880
OsAffx.15093.1.S1_s_at--604--7991Chr05:25432097..25432121 (25 bp)
GGATGAGGAGCGTCCGGCACAGGGT
LOC_Os05g43880
OsAffx.15093.1.S1_s_at--796--6131Chr05:25432051..25432075 (25 bp)
GAGGGTGTCAATGATCTACTTCGGA
LOC_Os05g43880
OsAffx.15093.1.S1_s_at--799--7711Chr05:25432049..25432073 (25 bp)
GGGTGTCAATGATCTACTTCGGAGG
LOC_Os05g43880
OsAffx.15093.1.S1_s_at--393--7451Chr05:25432047..25432071 (25 bp)
GTGTCAATGATCTACTTCGGAGGGC
LOC_Os05g43880
OsAffx.15093.1.S1_s_at--753--7071Chr05:25432045..25432069 (25 bp)
GTCAATGATCTACTTCGGAGGGCCG
LOC_Os05g43880
OsAffx.15093.1.S1_s_at--785--9731Chr05:25432044..25432068 (25 bp)
TCAATGATCTACTTCGGAGGGCCGC
LOC_Os05g43880
OsAffx.15093.1.S1_s_at--968--2991Chr05:25432042..25432066 (25 bp)
AATGATCTACTTCGGAGGGCCGCCA
LOC_Os05g43880
OsAffx.15093.1.S1_s_at--183--8851Chr05:25432040..25432064 (25 bp)
TGATCTACTTCGGAGGGCCGCCATT
LOC_Os05g43880
OsAffx.15093.1.S1_s_at--149--451Chr05:25432038..25432062 (25 bp)
ATCTACTTCGGAGGGCCGCCATTGG
LOC_Os05g43880
Target Sequence
GGCGACCACCAGTGGGTCACCGTCCCTCCCGACCCCGCCTCCTTCCTCGTCATCGTCGGCGACTCGCTGCAGGTGATGAC
GAACGGGAGGATGAGGAGCGTCCGGCACAGGGTGGTGGCCAACAAGCTCAAGTCGAGGGTGTCAATGATCTACTTCGGAG
GGCCGCCATTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15093.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis