Browse Element(s) Details


OsAffx.15129.1.S1_at

Description tigr:9633.m04380
TID=OsAffx.15129.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4659011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46530Os.54919.1.S1_at9/115+26865119..26866466pectinesterase inhibitor domain containing protein, expressed
LOC_Os05g46540OsAffx.4637.1.S1_at9/115+26866999..26868286hypothetical protein
LOC_Os05g46550Os.49604.1.S1_at11/115+26869303..26872649Adaptor-related protein complex 1, mu 1 subunit, putative, expressed
LOC_Os05g46560OsAffx.4638.1.S1_s_at11/115+26875251..26878167Ran GTPase activating protein, putative, expressed
LOC_Os05g46570Os.32650.1.S1_at11/115+26879699..26882594transducin family protein, putative, expressed
LOC_Os05g46580Os.4161.1.S1_at11/115+26883239..26886623Farnesyl pyrophosphate synthetase, putative, expressed
LOC_Os05g46590OsAffx.15129.1.S1_at11/115+26889094..26889699hypothetical protein
LOC_Os05g46600OsAffx.27341.1.S1_at11/115+26890405..26891228hypothetical protein
LOC_Os05g46610OsAffx.4639.1.S1_at11/115+26904201..26905534Myb-related protein Hv33, putative, expressed
LOC_Os05g46610Os.57514.1.S1_x_at1/115+26904201..26905534Myb-related protein Hv33, putative, expressed
LOC_Os05g46620OsAffx.4640.1.S1_x_at11/115+26907971..26911875Chaperone protein dnaJ 10, putative, expressed
LOC_Os05g46620Os.7168.1.S1_at10/115+26907971..26911875Chaperone protein dnaJ 10, putative, expressed
LOC_Os05g46630Os.8550.1.S1_x_at11/115+26912470..26915901expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15129.1.S1_at--496--3851Chr05:26889124..26889146 (23 bp)
CTGCAACACGGTAGGCGCGAGGTGA
LOC_Os05g46590
OsAffx.15129.1.S1_at--443--6411Chr05:26889550..26889574 (25 bp)
GATCTGCAGGGCGTTGTCAACTATG
LOC_Os05g46590
OsAffx.15129.1.S1_at--1078--9471Chr05:26889552..26889576 (25 bp)
TCTGCAGGGCGTTGTCAACTATGCC
LOC_Os05g46590
OsAffx.15129.1.S1_at--140--1091Chr05:26889557..26889581 (25 bp)
AGGGCGTTGTCAACTATGCCCCGGA
LOC_Os05g46590
OsAffx.15129.1.S1_at--338--8371Chr05:26889559..26889583 (25 bp)
GGCGTTGTCAACTATGCCCCGGAGC
LOC_Os05g46590
OsAffx.15129.1.S1_at--960--591Chr05:26889572..26889596 (25 bp)
ATGCCCCGGAGCTCGCAACTGTGCA
LOC_Os05g46590
OsAffx.15129.1.S1_at--864--8071Chr05:26889579..26889603 (25 bp)
GGAGCTCGCAACTGTGCACCTCCAG
LOC_Os05g46590
OsAffx.15129.1.S1_at--824--3931Chr05:26889623..26889647 (25 bp)
CGGAAGATGGCTACGCCTTTGCTTC
LOC_Os05g46590
OsAffx.15129.1.S1_at--657--851Chr05:26889629..26889653 (25 bp)
ATGGCTACGCCTTTGCTTCCGGCAG
LOC_Os05g46590
OsAffx.15129.1.S1_at--668--10251Chr05:26889640..26889664 (25 bp)
TTTGCTTCCGGCAGTCACCACGCTT
LOC_Os05g46590
OsAffx.15129.1.S1_at--1018--10651Chr05:26889645..26889669 (25 bp)
TTCCGGCAGTCACCACGCTTGTGCT
LOC_Os05g46590
Target Sequence 
CTGCAACACGGTAGGCGCGAGGTGAAGGATCTGCAGGGCGTTGTCAACTATGCCCCGGAGCTCGCAACTGTGCACCTCCA
GTCCGTCTTCCTCATGGGGACGGAAGATGGCTACGCCTTTGCTTCCGGCAGTCACCACGCTTGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15129.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis