Browse Element(s) Details


OsAffx.15140.1.S1_at

Description tigr:9633.m04468
TID=OsAffx.15140.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4796011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47930Os.12118.1.A1_a_at11/115+27390831..27395793thiol oxidoreductase, putative, expressed
LOC_Os05g47940OsAffx.4649.1.S1_x_at11/115+27399021..27400858transposon protein, putative, unclassified, expressed
LOC_Os05g47940OsAffx.4649.1.S1_at11/115+27399021..27400858transposon protein, putative, unclassified, expressed
LOC_Os05g47950Os.55729.1.S1_at11/115+27402540..27404322UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g47960OsAffx.15140.1.S1_at11/115+27415529..27416301expressed protein
LOC_Os05g47970Os.54133.1.S1_at10/115+27421663..27426068Microtubule associated protein containing protein, expressed
LOC_Os05g47980Os.4418.1.S1_at11/115+27426537..27430064ATP synthase beta chain, mitochondrial precursor, putative, expressed
LOC_Os05g47980Os.4418.1.S2_at11/115+27426537..27430064ATP synthase beta chain, mitochondrial precursor, putative, expressed
LOC_Os05g47980Os.10496.2.S1_x_at2/115+27426537..27430064ATP synthase beta chain, mitochondrial precursor, putative, expressed
LOC_Os05g47989NANA5+27431491..27432512NA
LOC_Os05g48000Os.55288.1.S1_at11/115+27437755..27438506expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15140.1.S1_at--378--1851Chr05:27416116..27416140 (25 bp)
ACGACGGCGGGTTGAGGCAGGTGGC
LOC_Os05g47960
OsAffx.15140.1.S1_at--521--1611Chr05:27416071..27416095 (25 bp)
AGCTGATGATGGACGCGCCGGGCCA
LOC_Os05g47960
OsAffx.15140.1.S1_at--481--1571Chr05:27415975..27415999 (25 bp)
AGCTCGGCGCGGTGTACGCCACGTT
LOC_Os05g47960
OsAffx.15140.1.S1_at--631--7731Chr05:27415965..27415989 (25 bp)
GGTGTACGCCACGTTCCCGATGAAG
LOC_Os05g47960
OsAffx.15140.1.S1_at--128--1891Chr05:27415955..27415979 (25 bp)
ACGTTCCCGATGAAGCGCCTCGGCA
LOC_Os05g47960
OsAffx.15140.1.S1_at--705--7991Chr05:27415881..27415905 (25 bp)
GGAGGCCCGGCGCTCGGCCAAGGTG
LOC_Os05g47960
OsAffx.15140.1.S1_at--396--4511Chr05:27415757..27415781 (25 bp)
GCCGACATGAACGTGTACAAGCACC
LOC_Os05g47960
OsAffx.15140.1.S1_at--743--5451Chr05:27415749..27415773 (25 bp)
GAACGTGTACAAGCACCGGCTGAGC
LOC_Os05g47960
OsAffx.15140.1.S1_at--648--9851Chr05:27415742..27415766 (25 bp)
TACAAGCACCGGCTGAGCAGCGAGC
LOC_Os05g47960
OsAffx.15140.1.S1_at--501--3391Chr05:27415725..27415749 (25 bp)
CAGCGAGCGCTCACGGAGGCCGACA
LOC_Os05g47960
OsAffx.15140.1.S1_at--470--1931Chr05:27415713..27415737 (25 bp)
ACGGAGGCCGACATTGGAGACCATC
LOC_Os05g47960
Target Sequence 
ACGACGGCGGGTTGAGGCAGGTGGCGCTGCCGGCGACGGCGGCGGAGCTGATGATGGACGCGCCGGGCCACTTCCTGGCG
GACGCGCGCGCGGCGCGGGTGGGCGCCCGCCTCGCCGCGCTGTCGGCCGACGAGGAGCTGGAGCTCGGCGCGGTGTACGC
CACGTTCCCGATGAAGCGCCTCGGCACGCCGCTGGCGCCCGCGGACATGGCGCGCCTCGCCGCCGTGGCCACCAGGGAGG
CCCGGCGCTCGGCCAAGGTGGCCGCCGCGGTCGTGGCGCCGCCGCCGACGCCGCTGCAGGCGGAGGACGCGGCGCCGAGG
CTGCGGCTGGATGAGATGGTCGACGACGAGGCGGTCGCCGCCGACATGAACGTGTACAAGCACCGGCTGAGCAGCGAGCG
CTCACGGAGGCCGACATTGGAGACCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15140.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis