Browse Element(s) Details


OsAffx.15153.1.S1_x_at

Description tigr:9633.m04544
TID=OsAffx.15153.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4861011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48590Os.8928.1.S1_at11/115+27762617..27767121Auxin-responsive protein IAA8, putative, expressed
LOC_Os05g48590Os.56074.1.S1_at1/115+27762617..27767121Auxin-responsive protein IAA8, putative, expressed
LOC_Os05g48600Os.49512.1.S1_at11/115+27777358..27781768Glycosyltransferase family 43 protein, expressed
LOC_Os05g48600Os.49512.1.S1_s_at11/115+27777358..27781768Glycosyltransferase family 43 protein, expressed
LOC_Os05g48610OsAffx.15153.1.S1_x_at11/115+27784557..27785049expressed protein
LOC_Os05g48610Os.19990.1.S1_x_at2/115+27784557..27785049expressed protein
LOC_Os05g48620Os.15195.1.S1_at11/115+27785202..27794256expressed protein
LOC_Os05g48630Os.10136.1.S1_at11/115+27795383..27796345Photosystem I reaction center subunit VI, chloroplast precursor, putative, expressed
LOC_Os05g48640Os.48456.1.S1_at11/115+27796794..27799616pollen-specific kinase partner protein, putative, expressed
LOC_Os05g48650OsAffx.15154.1.S1_at8/115+27800234..27801140DNA-binding protein, putative, expressed
LOC_Os05g48660Os.17666.1.S1_at11/115+27803341..27806137Protein kinase domain containing protein, expressed
LOC_Os05g48670OsAffx.27371.1.S1_at11/115+27809352..27812420Tub family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15153.1.S1_x_at--943--4691Chr05:27784761..27784785 (25 bp)
GCGGCCAACCTGAGGCTGGCGCGCG
LOC_Os05g48610
OsAffx.15153.1.S1_x_at--735--9471Chr05:27784795..27784819 (25 bp)
TCTACGCCGTGGTCAGGGCCGCCGT
LOC_Os05g48610
OsAffx.15153.1.S1_x_at--1143--7791Chr05:27784905..27784929 (25 bp)
GGTCGCGGCGCGATGAATCTGCTTC
LOC_Os05g48610
OsAffx.15153.1.S1_x_at--611--7231Chr05:27784906..27784930 (25 bp)
GTCGCGGCGCGATGAATCTGCTTCG
LOC_Os05g48610
OsAffx.15153.1.S1_x_at--311--9351Chr05:27784907..27784931 (25 bp)
TCGCGGCGCGATGAATCTGCTTCGG
LOC_Os05g48610
OsAffx.15153.1.S1_x_at--151--4151Chr05:27784908..27784932 (25 bp)
CGCGGCGCGATGAATCTGCTTCGGC
LOC_Os05g48610
OsAffx.15153.1.S1_x_at--976--8391Chr05:27784911..27784935 (25 bp)
GGCGCGATGAATCTGCTTCGGCGGG
LOC_Os05g48610
OsAffx.15153.1.S1_x_at--741--1671Chr05:27784937..27784961 (25 bp)
AGCCGAGCGTTTCACTGTTGTAGCA
LOC_Os05g48610
OsAffx.15153.1.S1_x_at--587--10051Chr05:27784970..27784994 (25 bp)
TAGTTTAAAGCAGGAGGTGGTGTAT
LOC_Os05g48610
OsAffx.15153.1.S1_x_at--1039--7731Chr05:27784985..27785009 (25 bp)
GGTGGTGTATGATGTAGCATGCCTC
LOC_Os05g48610
OsAffx.15153.1.S1_x_at--971--6271Chr05:27784995..27785019 (25 bp)
GATGTAGCATGCCTCCTTCGAATTC
LOC_Os05g48610
Target Sequence 
GCGGCCAACCTGAGGCTGGCGCGCGCGCTCGCCGTCTACGCCGTGGTCAGGGCCGCCGTGCGCGCGGCGCTGGTGGTCCG
CCCCAAGGTCGCCGCGCTCGCGTCGCGCGTCGCCTGGGCGCGCGACGACGGTGGCTGGGCTCGCGGTCGCGGCGCGATGA
ATCTGCTTCGGCGGGGAGCCGAGCGTTTCACTGTTGTAGCATGATGATGTAGTTTAAAGCAGGAGGTGGTGTATGATGTA
GCATGCCTCCTTCGAATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15153.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis