Browse Element(s) Details


OsAffx.15174.1.S1_at

Description tigr:9633.m04703
TID=OsAffx.15174.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5002011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49960OsAffx.27389.1.S1_at11/115+28568952..28569428hypothetical protein
LOC_Os05g49970Os.13493.1.S1_at11/115+28571458..28578090Translation initiation factor IF-2, chloroplast precursor, putative, expressed
LOC_Os05g49970Os.13493.1.S1_s_at11/115+28571458..28578090Translation initiation factor IF-2, chloroplast precursor, putative, expressed
LOC_Os05g49980Os.52474.1.S1_at11/115+28580017..28583324F-box domain containing protein, expressed
LOC_Os05g49990Os.32545.1.S1_at11/115+28583901..28585623expressed protein
LOC_Os05g50000OsAffx.15173.1.S1_x_at11/115+28588915..28590123hypothetical protein
LOC_Os05g50000OsAffx.15173.1.S1_at11/115+28588915..28590123hypothetical protein
LOC_Os05g50009NANA5+28591112..28591600NA
LOC_Os05g50020OsAffx.15174.1.S1_at11/115+28592944..28594149expressed protein
LOC_Os05g50030NANA5+28598837..28600840expressed protein
LOC_Os05g50040Os.10827.1.S1_x_at11/115+28602649..28605561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50040Os.46055.2.S1_x_at6/115+28602649..28605561transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50050NANA5+28606283..28606852hypothetical protein
LOC_Os05g50060OsAffx.25936.7.S1_s_at11/115+28607379..28611119transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50060OsAffx.25936.1.S1_s_at11/115+28607379..28611119transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50060OsAffx.25936.1.S1_at7/115+28607379..28611119transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50060OsAffx.25936.2.S1_x_at3/115+28607379..28611119transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50060OsAffx.25936.5.S1_x_at2/115+28607379..28611119transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g50070OsAffx.25437.1.S1_at3/115+28611715..28613698retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g50070OsAffx.5014.1.S1_at1/115+28611715..28613698retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g50070OsAffx.22766.1.S1_at1/115+28611715..28613698retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g50080Os.54644.1.S1_at9/115+28618961..28621222Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15174.1.S1_at--762--5671Chr05:28593486..28593510 (25 bp)
GACATCATTGTCGTGTGCAGAGCGT
LOC_Os05g50020
OsAffx.15174.1.S1_at--497--851Chr05:28593459..28593483 (25 bp)
ATGGCAGAGCCAGGGTCACCAGGCA
LOC_Os05g50020
OsAffx.15174.1.S1_at--954--8671Chr05:28593409..28593433 (25 bp)
TGTGAGTATCGAGCTGGGCAACATC
LOC_Os05g50020
OsAffx.15174.1.S1_at--45--6311Chr05:28593375..28593399 (25 bp)
GATGAACTCGGTTATCGCGACCTGC
LOC_Os05g50020
OsAffx.15174.1.S1_at--1029--811Chr05:28593306..28593330 (25 bp)
ATGGTCGAGAAGCTAGCTCCCAACT
LOC_Os05g50020
OsAffx.15174.1.S1_at--871--6011Chr05:28593237..28593261 (25 bp)
GAGAGGTTACACGACGGCCAGGTTC
LOC_Os05g50020
OsAffx.15174.1.S1_at--684--1931Chr05:28593224..28593248 (25 bp)
ACGGCCAGGTTCGTTACTCATGGGA
LOC_Os05g50020
OsAffx.15174.1.S1_at--219--7191Chr05:28593162..28593186 (25 bp)
GTCGGACAAGGTTGCTCCAGATCAT
LOC_Os05g50020
OsAffx.15174.1.S1_at--221--271Chr05:28593139..28593163 (25 bp)
ATATGAGGCGGCTAACTACCCCGGT
LOC_Os05g50020
OsAffx.15174.1.S1_at--788--2051Chr05:28593098..28593122 (25 bp)
ACTTCTTGGATGATCGGAGCACCCG
LOC_Os05g50020
OsAffx.15174.1.S1_at--903--8131Chr05:28593011..28593035 (25 bp)
GGAAATGGTCAGGAACACCTCCCCA
LOC_Os05g50020
Target Sequence 
GACATCATTGTCGTGTGCAGAGCGTCGATGGCAGAGCCAGGGTCACCAGGCAAGATCGTGGTCGTGGATGAGGTGCATGT
GAGTATCGAGCTGGGCAACATCGCGCCACGCGATGAACTCGGTTATCGCGACCTGCGCATCGTAGCCAGCTACCTCGTGG
AGTCCCGCAATGACCTGCTCATGGTCGAGAAGCTAGCTCCCAACTTGCTGTCGCCGGCATCGGCGTTCCGGGTGTTCCAG
ATGATCAAGGAGAGGTTACACGACGGCCAGGTTCGTTACTCATGGGAGGAGCTGACGACCAAGCTGGATGGCCGGATGCT
GTTCGTCGGACAAGGTTGCTCCAGATCATATGAGGCGGCTAACTACCCCGGTTTGGACGCAGGCGTCTACTTCTTGGATG
ATCGGAGCACCCGCCACGACCCCAAGATTCCATTTCAAGAAGCCCGCGCACGGCGGTATCTCTGCAGCGACAACGGGAAA
TGGTCAGGAACACCTCCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15174.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis