Browse Element(s) Details


OsAffx.15230.1.S1_at

Description tigr:9634.m00119
TID=OsAffx.15230.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0219011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02144Os.7894.1.S1_at11/116+642711..6457266-phosphogluconate dehydrogenase, decarboxylating, putative, expressed
LOC_Os06g02160Os.35821.1.S1_at7/116+646480..655657AMP-binding enzyme family protein, expressed
LOC_Os06g02160Os.33192.1.S1_at1/116+646480..655657AMP-binding enzyme family protein, expressed
LOC_Os06g02170Os.16379.1.S1_at11/116+656278..658069expressed protein
LOC_Os06g02180Os.25614.1.S1_at11/116+659149..664392cellulose synthase-like protein D4, putative, expressed
LOC_Os06g02180Os.57510.1.S1_x_at1/116+659149..664392cellulose synthase-like protein D4, putative, expressed
LOC_Os06g02190OsAffx.15230.1.S1_at11/116+668561..668830hypothetical protein
LOC_Os06g02200Os.32653.1.S1_at11/116+675127..677879pentatricopeptide, putative, expressed
LOC_Os06g02210Os.3697.1.S1_at11/116+677899..681798Bark storage protein A precursor, putative, expressed
LOC_Os06g02220Os.3700.1.S1_at11/116+691775..694749Ripening-related protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15230.1.S1_at--195--2531Chr06:668774..668798 (25 bp)
AACTATTTGGGCCATATGCAAGACT
LOC_Os06g02190
OsAffx.15230.1.S1_at--820--7551Chr06:668766..668790 (25 bp)
GGGCCATATGCAAGACTAGGAACAA
LOC_Os06g02190
OsAffx.15230.1.S1_at--1003--5151Chr06:668757..668781 (25 bp)
GCAAGACTAGGAACAAAGCTTGTTT
LOC_Os06g02190
OsAffx.15230.1.S1_at--432--2191Chr06:668745..668769 (25 bp)
ACAAAGCTTGTTTTGATAATATCCT
LOC_Os06g02190
OsAffx.15230.1.S1_at--838--6452Chr02:22070167..22070186 (20 bp)
GATAATATCCTTCCTAAAGACCCCA
NONE
OsAffx.15230.1.S1_at--821--111Chr06:668727..668751 (25 bp)
ATATCCTTCCTAAAGACCCCATTGA
LOC_Os06g02190
OsAffx.15230.1.S1_at--1093--9231Chr06:668726..668748 (23 bp)
TCCTTCCTAAAGACCCCATTGAGAA
LOC_Os06g02190
OsAffx.15230.1.S1_at--853--9831Chr06:668669..668741 (25 bp)
TAAAGACCCCATTGAGAATTTGGAG
LOC_Os06g02190
OsAffx.15230.1.S1_at--381--1531Chr06:668604..668628 (25 bp)
AGCAGGTGGCAAGTGATGTTTTCAA
LOC_Os06g02190
OsAffx.15230.1.S1_at--331--7531Chr06:668599..668623 (25 bp)
GTGGCAAGTGATGTTTTCAATTCAA
LOC_Os06g02190
OsAffx.15230.1.S1_at--155--8871Chr06:668591..668615 (25 bp)
TGATGTTTTCAATTCAAGATACGGT
LOC_Os06g02190
Target Sequence 
AACTATTTGGGCCATATGCAAGACTAGGAACAAAGCTTGTTTTGATAATATCCTTCCTAAAGACCCCATTGAGAATTTGG
AGGCAAACGGAAGAAAGTTGGAGCTGGGAGCCAGAGTGGTAAAGCAGGTGGCAAGTGATGTTTTCAATTCAAGATACGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15230.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis