Browse Element(s) Details


OsAffx.15263.1.S1_at

Description tigr:9634.m00374
TID=OsAffx.15263.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0458010/11YEATS family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04550OsAffx.15261.1.S1_at11/116+1967626..1970807hypothetical protein
LOC_Os06g04560Os.48368.1.S1_s_at11/116+1972537..1982164armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os06g04560Os.48368.1.S1_at11/116+1972537..1982164armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os06g04560OsAffx.15262.1.S1_at11/116+1972537..1982164armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os06g04570OsAffx.27455.1.S1_at11/116+1986292..1987387hypothetical protein
LOC_Os06g04580OsAffx.15263.1.S1_at10/116+1989030..1992736YEATS family protein, expressed
LOC_Os06g04580Os.10792.1.S1_at10/116+1989030..1992736YEATS family protein, expressed
LOC_Os06g04590OsAffx.27456.1.S1_at3/116+1999174..1999570Auxin responsive protein, expressed
LOC_Os06g04600Os.15940.1.S1_at11/116+1999873..2008069Brix domain containing protein, expressed
LOC_Os06g04600Os.15940.2.S1_at6/116+1999873..2008069Brix domain containing protein, expressed
LOC_Os06g04610Os.5449.1.S2_at11/116+2008997..2014660ribosome-binding factor A, chloroplast precursor, putative, expressed
LOC_Os06g04610Os.5449.1.S1_at11/116+2008997..2014660ribosome-binding factor A, chloroplast precursor, putative, expressed
LOC_Os06g04620Os.49218.1.S1_at11/116+2016779..2018352GDP-mannose 4,6 dehydratase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15263.1.S1_at--472--4771Chr06:1990830..1991006 (25 bp)
GCTGCTCGGCAACAGTTGGTAAATG
LOC_Os06g04580
OsAffx.15263.1.S1_at--468--2951Chr06:1990994..1991018 (25 bp)
CAGTTGGTAAATGTCTTTTTGGCTA
LOC_Os06g04580
OsAffx.15263.1.S1_at--392--10211Chr06:1991011..1991035 (25 bp)
TTTGGCTAAGTTGTACATCCCGTAT
LOC_Os06g04580
OsAffx.15263.1.S1_at--57--7031Chr06:1991023..1991047 (25 bp)
GTACATCCCGTATCAATTTCAAGAA
LOC_Os06g04580
OsAffx.15263.1.S1_at--1040--171NONE
ATTTCAAGAAGCGACCTCCATCCTT
NONE
OsAffx.15263.1.S1_at--831--7971Chr06:1991751..1991775 (25 bp)
GGATCCCCATCATCCGATGTGGGAG
LOC_Os06g04580
OsAffx.15263.1.S1_at--904--411Chr06:1991759..1991783 (25 bp)
ATCATCCGATGTGGGAGGCAGCTCT
LOC_Os06g04580
OsAffx.15263.1.S1_at--980--811Chr06:1991789..1991813 (25 bp)
ATGGATGCGGCTTGGAAGCTCCCTT
LOC_Os06g04580
OsAffx.15263.1.S1_at--10--3351Chr06:1991836..1991860 (25 bp)
CACGGCGTCGTGTATCAGATGCGGC
LOC_Os06g04580
OsAffx.15263.1.S1_at--44--2491Chr06:1991873..1992251 (25 bp)
AACAGAGGTTTGTGCAAGCTCACAT
LOC_Os06g04580
OsAffx.15263.1.S1_at--485--3591Chr06:1992612..1992636 (25 bp)
CATTCATCTTATGAGAACACCTACT
LOC_Os06g04580
Target Sequence 
GCTGCTCGGCAACAGTTGGTAAATGTCTTTTTGGCTAAGTTGTACATCCCGTATCAATTTCAAGAAGCGACCTCCATCCT
TGCTTCACCCCTCGCTCATGTTCCTGCTTCGTCCTGCCCACTCCCTGCTCCCTCTCTCTTCTCCTCTCTCCCGCTCCTCC
GTGCGACATTCCGCGTCCACCCGGACGCAGCAGCTCAGAAGGCGGTGGAGGGTTGCAAGCCGGCGGATCCCCATCATCCG
ATGTGGGAGGCAGCTCTGGTGGATGGATGCGGCTTGGAAGCTCCCTTTCTCTCTGTGCCTGCGACCTTCCACGGCGTCGT
GTATCAGATGCGGCGGGGGTGGCAACAACAGAGGTTTGTGCAAGCTCACATAGCTAAGCTGAGAAGGCAATTAAGCATGA
TAGATGGAATGCCTCAGCAATCCAAAGCTGTTTCTGCTGTTGCCTTAGCCCTTGGGCTTGCAATTAATGTACTAACAAGC
AGTGTCATTGTGCATATATTCTACTATGATTTCATTCATCTTATGAGAACACCTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15263.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis