Browse Element(s) Details

OsAffx.15266.1.S1_x_at

Description

tigr:9634.m00409
TID=OsAffx.15266.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Sugar transporter
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g04900	11/11	Hexose carrier protein HEX6, putative

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g04860	OsAffx.4724.1.S1_at	11/11	6	+	2135048..2135555	hypothetical protein
LOC_Os06g04860	Os.28079.1.S1_x_at	1/11	6	+	2135048..2135555	hypothetical protein
LOC_Os06g04860	Os.28079.2.S1_x_at	1/11	6	+	2135048..2135555	hypothetical protein
LOC_Os06g04870	Os.2365.1.S1_at	11/11	6	+	2136451..2138092	SlHDL2, putative, expressed
LOC_Os06g04870	Os.49759.1.S1_x_at	1/11	6	+	2136451..2138092	SlHDL2, putative, expressed
LOC_Os06g04880	Os.26392.1.S1_at	11/11	6	+	2139054..2145617	U-box domain containing protein, expressed
LOC_Os06g04890	NA	NA	6	+	2151140..2151538	expressed protein
LOC_Os06g04900	OsAffx.15266.1.S1_x_at	11/11	6	+	2154078..2155717	Hexose carrier protein HEX6, putative
LOC_Os06g04910	Os.16783.1.S1_at	10/11	6	+	2156496..2159577	hydrolase, NUDIX family protein, expressed
LOC_Os06g04920	Os.10583.1.S1_at	11/11	6	+	2161624..2168677	Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os06g04920	Os.10583.1.S1_s_at	11/11	6	+	2161624..2168677	Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os06g04930	Os.3571.2.S1_s_at	11/11	6	+	2169964..2172401	expressed protein
LOC_Os06g04930	OsAffx.15267.1.S1_at	11/11	6	+	2169964..2172401	expressed protein
LOC_Os06g04930	Os.3571.1.S1_at	2/11	6	+	2169964..2172401	expressed protein
LOC_Os06g04930	Os.55511.1.S1_at	1/11	6	+	2169964..2172401	expressed protein
LOC_Os06g04940	Os.37255.1.A1_at	10/11	6	+	2174884..2175927	expressed protein
LOC_Os06g04940	Os.38638.3.S1_x_at	3/11	6	+	2174884..2175927	expressed protein
LOC_Os06g04950	Os.38638.2.S1_at	11/11	6	+	2179251..2180117	Early nodulin 93 ENOD93 protein, expressed
LOC_Os06g04950	OsAffx.27459.4.S1_at	6/11	6	+	2179251..2180117	Early nodulin 93 ENOD93 protein, expressed
LOC_Os06g04950	Os.38638.3.S1_x_at	4/11	6	+	2179251..2180117	Early nodulin 93 ENOD93 protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0016020	cellular_component	membrane
GO:0005351	molecular_function	sugar porter activity
GO:0015144	molecular_function	carbohydrate transporter activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.15266.1.S1_x_at--674--865	1	Chr06:2154595..2154619 (25 bp)	TGGGCGCGACGCTCCTCTCCATGTT	LOC_Os06g04900
OsAffx.15266.1.S1_x_at--354--457	1	Chr06:2154526..2154550 (25 bp)	GCGCCCAGATGCTCGCATCGCAGGT	LOC_Os06g04900
OsAffx.15266.1.S1_x_at--1110--61	1	Chr06:2154518..2154542 (25 bp)	ATGCTCGCATCGCAGGTGCTGATCG	LOC_Os06g04900
OsAffx.15266.1.S1_x_at--780--885	1	Chr06:2154430..2154454 (25 bp)	TGATCCTCCTGATCGCGGCGTACGT	LOC_Os06g04900
OsAffx.15266.1.S1_x_at--210--691	1	Chr06:2154411..2154435 (25 bp)	GTACGTCGCCGGATTCGGGTGGTCG	LOC_Os06g04900
OsAffx.15266.1.S1_x_at--929--397	1	Chr06:2154313..2154337 (25 bp)	CGGTGGCGACGAGCTTCGTGTTCAC	LOC_Os06g04900
OsAffx.15266.1.S1_x_at--36--593	1	Chr06:2154303..2154327 (25 bp)	GAGCTTCGTGTTCACCGTGTTCGTG	LOC_Os06g04900
OsAffx.15266.1.S1_x_at--756--967	1	Chr06:2154292..2154316 (25 bp)	TCACCGTGTTCGTGGCGCAGGCGTT	LOC_Os06g04900
OsAffx.15266.1.S1_x_at--1087--379	1	Chr06:2154266..2154290 (25 bp)	CTCGCCATGCTCTGCCGCATGAGGG	LOC_Os06g04900
OsAffx.15266.1.S1_x_at--702--933	1	Chr06:2154211..2154235 (25 bp)	TCGCCGCCATGACCGCGTTCGTGTA	LOC_Os06g04900
OsAffx.15266.1.S1_x_at--659--439	1	Chr06:2154127..2154151 (25 bp)	GCCACTGGTTCTGGTCCAGGGTCGT	LOC_Os06g04900

Target Sequence

TGGGCGCGACGCTCCTCTCCATGTTCGCCGTCGACCGCTTCGGCCGCCGCACGCTGTTCCTCGCCGGCGGCGCCCAGATG
CTCGCATCGCAGGTGCTGATCGGCGGCATCATGGCGGCGAAGCTGGGCGACGACGGCGGCGTGAGCAGGGCGTGGGCGGC
GGCGCTGATCCTCCTGATCGCGGCGTACGTCGCCGGATTCGGGTGGTCGTGGGGGCCGCTGGGCTGGCTCGTCCCCAGCG
AGGTGTTCCCGCTGGAGGTGAGGTCGGCGGGGCAGAGCGTGACGGTGGCGACGAGCTTCGTGTTCACCGTGTTCGTGGCG
CAGGCGTTCCTCGCCATGCTCTGCCGCATGAGGGCCGGGATCTTCTTCTTCTTCGCCGCGTGGCTCGCCGCCATGACCGC
GTTCGTGTACCTCCTCCTGCCGGAGACCAAGGGGGTGCCCATCGAGGAGGTCGCCGGCGTGTGGCGGGGCCACTGGTTCT
GGTCCAGGGTCGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis