Browse Element(s) Details


OsAffx.1527.2.A1_at

Description tigr:9635.m04619
TID=OsAffx.1527.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4596011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45910OsAffx.28921.1.S1_at11/117+27397589..27398884hypothetical protein
LOC_Os07g45920OsAffx.19600.2.S1_s_at6/117+27400884..27405288transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g45930NANA7+27410113..27410667transposon protein, putative, unclassified
LOC_Os07g45940NANA7+27411576..27417479retrotransposon protein, putative, unclassified
LOC_Os07g45950OsAffx.16728.1.S1_at11/117+27419403..27421947hypothetical protein
LOC_Os07g45960OsAffx.1527.2.A1_at11/117+27423161..27424376hypothetical protein
LOC_Os07g45970NANA7+27426741..27436979retrotransposon protein, putative, unclassified, expressed
LOC_Os07g45980OsAffx.16729.1.S1_at11/117+27438628..27439017hypothetical protein
LOC_Os07g45990NANA7+27440575..27445883retrotransposon protein, putative, unclassified, expressed
LOC_Os07g46000NANA7+27447296..27449471retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1527.2.A1_at--244--1673Chr07:27424308..27424332 (25 bp)
AGCCCGCTCCCATCCATGGCAGGAG
LOC_Os07g45960
OsAffx.1527.2.A1_at--414--7651Chr07:27424099..27424123 (25 bp)
GGGATGCAATGCTGACATCTACAAT
LOC_Os07g45960
OsAffx.1527.2.A1_at--1037--651Chr07:27424096..27424120 (25 bp)
ATGCAATGCTGACATCTACAATGAT
LOC_Os07g45960
OsAffx.1527.2.A1_at--140--631Chr07:27424091..27424115 (25 bp)
ATGCTGACATCTACAATGATGCTTC
LOC_Os07g45960
OsAffx.1527.2.A1_at--158--8951Chr07:27424087..27424111 (25 bp)
TGACATCTACAATGATGCTTCACCT
LOC_Os07g45960
OsAffx.1527.2.A1_at--578--711Chr07:27424076..27424100 (25 bp)
ATGATGCTTCACCTTCATTGGCTGT
LOC_Os07g45960
OsAffx.1527.2.A1_at--967--631Chr07:27424073..27424097 (25 bp)
ATGCTTCACCTTCATTGGCTGTCAA
LOC_Os07g45960
OsAffx.1527.2.A1_at--977--4891Chr07:27424071..27424095 (25 bp)
GCTTCACCTTCATTGGCTGTCAAGT
LOC_Os07g45960
OsAffx.1527.2.A1_at--299--10531Chr07:27424069..27424093 (25 bp)
TTCACCTTCATTGGCTGTCAAGTTG
LOC_Os07g45960
OsAffx.1527.2.A1_at--882--4731Chr07:27424056..27424080 (25 bp)
GCTGTCAAGTTGAATGCCTGGGCAA
LOC_Os07g45960
OsAffx.1527.2.A1_at--440--8731Chr07:27424054..27424078 (25 bp)
TGTCAAGTTGAATGCCTGGGCAATT
LOC_Os07g45960
Target Sequence 
AGCCCGCTCCCATCCATGGCAGGAGCCCGAGAGTGAAAGGGGATGCAATGCTGACATCTACAATGATGCTTCACCTTCAT
TGGCTGTCAAGTTGAATGCCTGGGCAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1527.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis