Browse Element(s) Details


OsAffx.16729.1.S1_at

Description tigr:9635.m04621
TID=OsAffx.16729.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4598011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45940NANA7+27411576..27417479retrotransposon protein, putative, unclassified
LOC_Os07g45950OsAffx.16728.1.S1_at11/117+27419403..27421947hypothetical protein
LOC_Os07g45960OsAffx.1527.2.A1_at11/117+27423161..27424376hypothetical protein
LOC_Os07g45970NANA7+27426741..27436979retrotransposon protein, putative, unclassified, expressed
LOC_Os07g45980OsAffx.16729.1.S1_at11/117+27438628..27439017hypothetical protein
LOC_Os07g45990NANA7+27440575..27445883retrotransposon protein, putative, unclassified, expressed
LOC_Os07g46000NANA7+27447296..27449471retrotransposon protein, putative, unclassified
LOC_Os07g46010NANA7+27452468..27454061retrotransposon protein, putative, unclassified
LOC_Os07g46020Os.41695.15.S1_s_at11/117+27456400..27461346transposon protein, putative, Mutator sub-class
LOC_Os07g46020Os.41695.2.S1_x_at10/117+27456400..27461346transposon protein, putative, Mutator sub-class
LOC_Os07g46020Os.41695.3.S1_x_at10/117+27456400..27461346transposon protein, putative, Mutator sub-class
LOC_Os07g46020Os.41695.5.S1_x_at9/117+27456400..27461346transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16729.1.S1_at--412--1451Chr07:27438674..27438698 (25 bp)
AGAAGCAGAACTCGGCGATCCAGGC
LOC_Os07g45980
OsAffx.16729.1.S1_at--1017--1431Chr07:27438680..27438704 (25 bp)
AGAACTCGGCGATCCAGGCGTCCAT
LOC_Os07g45980
OsAffx.16729.1.S1_at--712--571Chr07:27438691..27438715 (25 bp)
ATCCAGGCGTCCATGGGTTCGCTGG
LOC_Os07g45980
OsAffx.16729.1.S1_at--372--4231Chr07:27438727..27438751 (25 bp)
CCGTTCGTGGTGAAACTGTTGGGCT
LOC_Os07g45980
OsAffx.16729.1.S1_at--138--2671Chr07:27438754..27438778 (25 bp)
AAGCCGGCGGTGGACCAAGCAGTGG
LOC_Os07g45980
OsAffx.16729.1.S1_at--1119--2811Chr07:27438823..27438847 (25 bp)
AAGTTGGCGCGGACCCCTGCGGCCA
LOC_Os07g45980
OsAffx.16729.1.S1_at--879--1611Chr07:27438854..27438878 (25 bp)
AGCTGGCGGATCTGCCTCCTCTACT
LOC_Os07g45980
OsAffx.16729.1.S1_at--679--5411Chr07:27438892..27438916 (25 bp)
GAACCACGGATCTCGACACCTAAGG
LOC_Os07g45980
OsAffx.16729.1.S1_at--983--5631Chr07:27438906..27438930 (25 bp)
GACACCTAAGGAGGAGCCATCCGCT
LOC_Os07g45980
OsAffx.16729.1.S1_at--170--971Chr07:27438917..27438941 (25 bp)
AGGAGCCATCCGCTCTTCTAGAGGG
LOC_Os07g45980
OsAffx.16729.1.S1_at--793--8031Chr07:27438942..27438966 (25 bp)
GGAGTCGTCTCATGGCCCGAATGGC
LOC_Os07g45980
Target Sequence 
AGAAGCAGAACTCGGCGATCCAGGCGTCCATGGGTTCGCTGGAGGAGATCAAGCCGTTCGTGGTGAAACTGTTGGGCTGG
AAGCCGGCGGTGGACCAAGCAGTGGCGGATTTGCGGACGGAGATGGGGGACCTGCGTCTCCAAGTGGAGAAGTTGGCGCG
GACCCCTGCGGCCACCGTCAAGCTGGCGGATCTGCCTCCTCTACTACCCACACCGTCCGAACCACGGATCTCGACACCTA
AGGAGGAGCCATCCGCTCTTCTAGAGGGGGAGTCGTCTCATGGCCCGAATGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16729.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis