Browse Element(s) Details


OsAffx.28921.1.S1_at

Description tigr:9635.m04614
TID=OsAffx.28921.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4591011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45880Os.9778.1.S1_at1/117+27373379..27377660retrotransposon protein, putative, unclassified
LOC_Os07g45890OsAffx.25936.7.S1_s_at9/117+27379587..27385315transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g45890OsAffx.25936.1.S1_s_at8/117+27379587..27385315transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g45890OsAffx.25936.1.S1_at7/117+27379587..27385315transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g45890OsAffx.25936.2.S1_x_at3/117+27379587..27385315transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g45890OsAffx.25936.5.S1_x_at2/117+27379587..27385315transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g45900Os.10827.1.S1_x_at9/117+27388989..27394733transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g45900Os.46055.2.S1_x_at3/117+27388989..27394733transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g45910OsAffx.28921.1.S1_at11/117+27397589..27398884hypothetical protein
LOC_Os07g45920OsAffx.19600.2.S1_s_at6/117+27400884..27405288transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g45930NANA7+27410113..27410667transposon protein, putative, unclassified
LOC_Os07g45940NANA7+27411576..27417479retrotransposon protein, putative, unclassified
LOC_Os07g45950OsAffx.16728.1.S1_at11/117+27419403..27421947hypothetical protein
LOC_Os07g45960OsAffx.1527.2.A1_at11/117+27423161..27424376hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28921.1.S1_at--554--3131Chr07:27397626..27397650 (25 bp)
AATTTTGTAGCGTGCGGGACTGCGG
LOC_Os07g45910
OsAffx.28921.1.S1_at--534--1971Chr07:27397644..27397668 (25 bp)
ACTGCGGGCAGGAGAGATTAAGCAA
LOC_Os07g45910
OsAffx.28921.1.S1_at--462--3431Chr07:27397686..27397710 (25 bp)
CAGATAGTGAGGGTGGCAACCATCA
LOC_Os07g45910
OsAffx.28921.1.S1_at--679--7531Chr07:27397698..27397722 (25 bp)
GTGGCAACCATCAATCTACCGGATT
LOC_Os07g45910
OsAffx.28921.1.S1_at--754--9691Chr07:27397708..27397732 (25 bp)
TCAATCTACCGGATTTTTGGGACCG
LOC_Os07g45910
OsAffx.28921.1.S1_at--918--10511Chr07:27398592..27398616 (25 bp)
TTCACATGGGCTACCGTCGTTCTCC
LOC_Os07g45910
OsAffx.28921.1.S1_at--731--9431Chr07:27398631..27398655 (25 bp)
TCGGTGCTCCGACCCGATGAAGATT
LOC_Os07g45910
OsAffx.28921.1.S1_at--499--9291Chr07:27398638..27398662 (25 bp)
TCCGACCCGATGAAGATTTCCTTTA
LOC_Os07g45910
OsAffx.28921.1.S1_at--488--5351Chr07:27398649..27398673 (25 bp)
GAAGATTTCCTTTATGCAACCACCA
LOC_Os07g45910
OsAffx.28921.1.S1_at--871--5151Chr07:27398664..27398688 (25 bp)
GCAACCACCATAATCTTCGTAGAAG
LOC_Os07g45910
OsAffx.28921.1.S1_at--449--4011Chr07:27398681..27398842 (25 bp)
CGTAGAAGCTGCAAGAAATAGTCTT
LOC_Os07g45910
Target Sequence 
AATTTTGTAGCGTGCGGGACTGCGGGCAGGAGAGATTAAGCAAGGTGGATGAGGGGAAGGCAGATAGTGAGGGTGGCAAC
CATCAATCTACCGGATTTTTGGGACCGAGGACGGGCAACGCCATCGGCACGCTGGCCTTCACATGGGCTACCGTCGTTCT
CCTCGGCGGCTACCCCTCGGTGCTCCGACCCGATGAAGATTTCCTTTATGCAACCACCATAATCTTCGTAGAAGCTGCAA
GAAATAGTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28921.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis