Browse Element(s) Details

OsAffx.15309.1.S1_at

Description

tigr:9634.m00772
TID=OsAffx.15309.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g08350	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g08310	Os.8093.2.S1_at	11/11	6	+	4024531..4029376	ATPase 8, plasma membrane-type, putative, expressed
LOC_Os06g08310	Os.8093.1.S1_at	11/11	6	+	4024531..4029376	ATPase 8, plasma membrane-type, putative, expressed
LOC_Os06g08310	Os.8093.2.S1_x_at	11/11	6	+	4024531..4029376	ATPase 8, plasma membrane-type, putative, expressed
LOC_Os06g08310	OsAffx.5813.1.S1_x_at	2/11	6	+	4024531..4029376	ATPase 8, plasma membrane-type, putative, expressed
LOC_Os06g08320	Os.12267.2.S1_s_at	11/11	6	+	4032490..4033175	60S ribosomal protein L39, putative, expressed
LOC_Os06g08320	Os.46185.1.S1_x_at	1/11	6	+	4032490..4033175	60S ribosomal protein L39, putative, expressed
LOC_Os06g08329	NA	NA	6	+	4035587..4035761	NA
LOC_Os06g08340	Os.55579.1.S1_at	11/11	6	+	4039785..4040764	AP2 domain containing protein, expressed
LOC_Os06g08350	OsAffx.15309.1.S1_at	11/11	6	+	4050269..4051805	expressed protein
LOC_Os06g08360	NA	NA	6	+	4061445..4062329	UPF0326 protein hag1, putative, expressed
LOC_Os06g08370	OsAffx.23250.2.S1_x_at	3/11	6	+	4063784..4064226	hypothetical protein
LOC_Os06g08380	OsAffx.27509.1.S1_at	11/11	6	+	4065765..4082812	Beta-1,3-glucan synthase, putative, expressed
LOC_Os06g08380	OsAffx.27509.1.S2_s_at	11/11	6	+	4065765..4082812	Beta-1,3-glucan synthase, putative, expressed
LOC_Os06g08380	OsAffx.27509.1.S2_at	9/11	6	+	4065765..4082812	Beta-1,3-glucan synthase, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.15309.1.S1_at--755--929	1	Chr06:4050861..4050885 (25 bp)	TCCGCGGCAGCGAGAGGCTCGACCT	LOC_Os06g08350
OsAffx.15309.1.S1_at--447--941	1	Chr06:4050957..4050981 (25 bp)	TCGTCCTCCGGTTCGAGACGGCCGA	LOC_Os06g08350
OsAffx.15309.1.S1_at--921--189	1	Chr06:4050981..4051005 (25 bp)	ACGTCGCGGACACCTCCAAGATCGA	LOC_Os06g08350
OsAffx.15309.1.S1_at--973--321	1	Chr06:4050997..4051021 (25 bp)	CAAGATCGACATGGAACGTGACGCC	LOC_Os06g08350
OsAffx.15309.1.S1_at--992--737	1	Chr06:4051014..4051038 (25 bp)	GTGACGCCGGCATGCTCGCGCTAAG	LOC_Os06g08350
OsAffx.15309.1.S1_at--850--933	1	Chr06:4051029..4051053 (25 bp)	TCGCGCTAAGGCAGAGCTCTTTCAA	LOC_Os06g08350
OsAffx.15309.1.S1_at--146--591	1	Chr06:4051042..4051066 (25 bp)	GAGCTCTTTCAACAGGAAGCACCAC	LOC_Os06g08350
OsAffx.15309.1.S1_at--900--719	1	Chr06:4051289..4051313 (25 bp)	GTCGTGCACCTCTGGAAGACGAAGA	LOC_Os06g08350
OsAffx.15309.1.S1_at--455--605	1	Chr06:4051701..4051724 (24 bp)	GAGATTGACTCCAACTCTCCGAGAT	LOC_Os06g08350
OsAffx.15309.1.S1_at--701--377	1	Chr06:4051714..4051738 (25 bp)	CTCTCCGAGATTTGTATCCCAACAT	LOC_Os06g08350
OsAffx.15309.1.S1_at--73--17	1	Chr06:4051737..4051761 (25 bp)	ATTTTGTTTTCTCCATCTCTAATGA	LOC_Os06g08350

Target Sequence

TCCGCGGCAGCGAGAGGCTCGACCTCCCGCGCGGCCGCGTCCGCGTCTCGTGGGACCTCCACGGCTGGCTCTTCGCCGCC
GACGCCGTCGCGGTGTTCGTCCTCCGGTTCGAGACGGCCGACGTCGCGGACACCTCCAAGATCGACATGGAACGTGACGC
CGGCATGCTCGCGCTAAGGCAGAGCTCTTTCAACAGGAAGCACCACCACCACGGCGGCGGCGGCGGCGCCGCCGCCGAGA
GCTGGTGCAGCAGCGACAGCGACAGGAGAGGGTGGAGGAGGGGGCCGTTCAGGTCGGGGTCGGACTCGTCGCCGGCGGTG
TCGGTGGCGTCGACGTCGGCGGCGTCGTCGGCCGGGAGCATGGCGACGGTGGCCGACTGGGCCACGGCGGAGGAGGCGGC
GATGAACGACGGCGGCGGCTTCTCTCTCGTCGTGCACCTCTGGAAGACGAAGAAGAGGAGATTGACTCCAACTCTCCGAG
ATTTGTATCCCAACATTTTGTTTTCTCCATCTCTAATGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis