Browse Element(s) Details


OsAffx.15314.1.S1_at

Description tigr:9634.m00801
TID=OsAffx.15314.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0857011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08560OsAffx.15313.1.S1_s_at11/116+4248414..4263340ABC transporter family protein, putative, expressed
LOC_Os06g08560Os.30059.2.S1_x_at2/116+4248414..4263340ABC transporter family protein, putative, expressed
LOC_Os06g08570OsAffx.15314.1.S1_at11/116+4265481..4267140pentatricopeptide, putative, expressed
LOC_Os06g08580Os.15299.1.S1_at11/116+4267970..4269615Transferase family protein, expressed
LOC_Os06g08580Os.15299.1.S1_x_at11/116+4267970..4269615Transferase family protein, expressed
LOC_Os06g08590OsAffx.27512.1.S1_at11/116+4270135..4271242hypothetical protein
LOC_Os06g08600NANA6+4275275..4276141NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g08610Os.56006.1.S1_at11/116+4285709..4286860Transferase family protein, expressed
LOC_Os06g08620Os.55265.1.S1_at9/116+4287385..4287951hypothetical protein
LOC_Os06g08630OsAffx.19542.3.S1_x_at10/116+4289192..4293413retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15314.1.S1_at--876--8291Chr06:4266055..4266079 (25 bp)
GGCCGTTAGACCAGAGGATGTACTC
LOC_Os06g08570
OsAffx.15314.1.S1_at--1106--6251Chr06:4266020..4266044 (25 bp)
GATGGGTTGCACTGGATTTCTCAAC
LOC_Os06g08570
OsAffx.15314.1.S1_at--193--7951Chr06:4265988..4266012 (25 bp)
GGATAGGGTTTCTCCCTGTGACAAG
LOC_Os06g08570
OsAffx.15314.1.S1_at--393--9311Chr06:4265976..4266000 (25 bp)
TCCCTGTGACAAGCGTTCTGATGAC
LOC_Os06g08570
OsAffx.15314.1.S1_at--496--1291Chr06:4265892..4265916 (25 bp)
AGATCGAATTGATGGCTGCCTGAGA
LOC_Os06g08570
OsAffx.15314.1.S1_at--15--5731Chr06:4265866..4265890 (25 bp)
GACTGCATACCTCTGCTTGAATATT
LOC_Os06g08570
OsAffx.15314.1.S1_at--519--6131Chr06:4265824..4265848 (25 bp)
GAGGAGCTACTCTGGGATTAACTGA
LOC_Os06g08570
OsAffx.15314.1.S1_at--1157--2551Chr06:4265805..4265829 (25 bp)
AACTGATTGACTCCAATTTGCACAA
LOC_Os06g08570
OsAffx.15314.1.S1_at--809--3291Chr06:4265732..4265756 (25 bp)
CAAATGTCTTGCAGGTGGGATCAAA
LOC_Os06g08570
OsAffx.15314.1.S1_at--436--3151Chr06:4265708..4265732 (25 bp)
AATTCCGTGCGAGCGTATGGCAACT
LOC_Os06g08570
OsAffx.15314.1.S1_at--1081--5931Chr06:4265581..4265605 (25 bp)
GAGCAGCTACGCAACAAATTTTTAG
LOC_Os06g08570
Target Sequence 
GGCCGTTAGACCAGAGGATGTACTCAGAATTGCTTGATGGGTTGCACTGGATTTCTCAACCACATCAGGATAGGGTTTCT
CCCTGTGACAAGCGTTCTGATGACTGAAATGCTTTGATCAATGGATTGATTTGCATTGTATGATGGTGATCATAGGCATA
AAAAGATCGAATTGATGGCTGCCTGAGAAGACTGCATACCTCTGCTTGAATATTCAAGATGAATTGATGCAGAGGAGCTA
CTCTGGGATTAACTGATTGACTCCAATTTGCACAAGCAAATGTGGGTATGGCTGATTCAAAGCCAAGGGGTTGGAGAAAT
CTGCAAATGTCTTGCAGGTGGGATCAAAATTCCGTGCGAGCGTATGGCAACTATTGTTGATTGGTGTCTAGTGATAGCTG
ATAAACACGGCTAAAAGGGCAATTTCTAGAGTAAATCATGCAGAGAAAGTTGTTTCAGGTATCATATATGATATGAGCAG
CTACGCAACAAATTTTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15314.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis