Browse Element(s) Details


OsAffx.15324.1.S1_at

Description tigr:9634.m00852
TID=OsAffx.15324.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0900011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g08950NANA6+4508033..4514188retrotransposon protein, putative, unclassified
LOC_Os06g08960OsAffx.15322.1.S1_x_at11/116+4515894..4523961hypothetical protein
LOC_Os06g08960OsAffx.13740.1.S1_at1/116+4515894..4523961hypothetical protein
LOC_Os06g08970OsAffx.27522.1.S1_x_at7/116+4525001..4527138retrotransposon protein, putative, unclassified
LOC_Os06g08970OsAffx.3613.1.S1_x_at2/116+4525001..4527138retrotransposon protein, putative, unclassified
LOC_Os06g08970OsAffx.3613.1.S1_at1/116+4525001..4527138retrotransposon protein, putative, unclassified
LOC_Os06g08980OsAffx.15323.1.S1_at5/116+4528985..4529416hypothetical protein
LOC_Os06g08990Os.55034.1.S1_at11/116+4529989..4531664expressed protein
LOC_Os06g09000OsAffx.15324.1.S1_at11/116+4533691..4534054hypothetical protein
LOC_Os06g09010OsAffx.15323.1.S1_at8/116+4535225..4536805hypothetical protein
LOC_Os06g09010OsAffx.15726.1.S1_at1/116+4535225..4536805hypothetical protein
LOC_Os06g09020Os.10201.1.S1_at11/116+4537330..4539523expressed protein
LOC_Os06g09030OsAffx.27523.1.S1_x_at1/116+4545927..4546190hypothetical protein
LOC_Os06g09040NANA6+4550878..4552664hypothetical protein
LOC_Os06g09050OsAffx.4776.1.S1_s_at2/116+4555488..4557021hypothetical protein
LOC_Os06g09060Os.29067.2.S1_at4/116+4557431..4562454retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15324.1.S1_at--254--1631Chr06:4533769..4533793 (25 bp)
AGCGGCCGTGACTGCCACTTCTTCG
LOC_Os06g09000
OsAffx.15324.1.S1_at--719--5851Chr06:4533802..4533826 (25 bp)
GAGCTCCCCGTTATCCACGGCAAGG
LOC_Os06g09000
OsAffx.15324.1.S1_at--784--10431Chr06:4533812..4533836 (25 bp)
TTATCCACGGCAAGGCGCCGCTCGA
LOC_Os06g09000
OsAffx.15324.1.S1_at--1090--4071Chr06:4533843..4533867 (25 bp)
CGACGCCTTCTTCCTGTTAACGATG
LOC_Os06g09000
OsAffx.15324.1.S1_at--257--9271Chr06:4533854..4533874 (21 bp)
TCCTGTTAACGATGAAATTTGCTGA
LOC_Os06g09000
OsAffx.15324.1.S1_at--128--9111Chr06:4533896..4533919 (24 bp)
TGCTGAAAGTCACTATCGGCTTCCG
LOC_Os06g09000
OsAffx.15324.1.S1_at--820--3311Chr06:4533905..4533929 (25 bp)
CACTATCGGCTTCCGAGTTCTAGAA
LOC_Os06g09000
OsAffx.15324.1.S1_at--703--1454Chr08:7480553..7480739 (25 bp)
AGAAGCAGCCGATGGGAGTTGTCAA
NONE
OsAffx.15324.1.S1_at--276--8053Chr06:4533940..4533964 (25 bp)
GGAGTTGTCAAGTCGCCATGCTATC
LOC_Os06g09000
OsAffx.15324.1.S1_at--652--7231Chr06:4533951..4533975 (25 bp)
GTCGCCATGCTATCATGTTCTTAGT
LOC_Os06g09000
OsAffx.15324.1.S1_at--454--3511Chr06:4533964..4533988 (25 bp)
CATGTTCTTAGTGGAGTCGAATCAA
LOC_Os06g09000
Target Sequence 
AGCGGCCGTGACTGCCACTTCTTCGCCGTCGACGAGCTCCCCGTTATCCACGGCAAGGCGCCGCTCGACTGCTACGACGC
CTTCTTCCTGTTAACGATGAAATTTGCTGAAAGTCACTATCGGCTTCCGAGTTCTAGAAGCAGCCGATGGGAGTTGTCAA
GTCGCCATGCTATCATGTTCTTAGTGGAGTCGAATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15324.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis