Browse Element(s) Details


OsAffx.15352.1.S1_x_at

Description tigr:9631.m03819
TID=OsAffx.15352.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3972011/11transposon protein, putative, unclassified
LOC_Os06g1045010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39680OsAffx.22684.1.S1_at11/113+22030346..22031587retrotransposon protein, putative, LINE subclass
LOC_Os03g39690Os.28515.1.S1_at11/113+22037842..22040792Cytochrome P450 family protein, expressed
LOC_Os03g39700NANA3+22044250..22044729hypothetical protein
LOC_Os03g39710Os.315.1.S1_at11/113+22046645..22049999Sugar carrier protein C, putative, expressed
LOC_Os03g39720OsAffx.15352.1.S1_s_at11/113+22054288..22055579transposon protein, putative, unclassified
LOC_Os03g39720OsAffx.15352.1.S1_x_at11/113+22054288..22055579transposon protein, putative, unclassified
LOC_Os03g39730NANA3+22058377..22059737hypothetical protein
LOC_Os03g39740Os.33081.1.S1_at11/113+22065048..22071100expressed protein
LOC_Os03g39760Os.15692.1.S1_at11/113+22077957..22080213Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15352.1.S1_x_at--687--4454Chr06:5374324..5374348 (25 bp)
GCCTTTGACAATGGCTGCTGACAGA
LOC_Os06g10450
OsAffx.15352.1.S1_x_at--928--2452Chr06:5374557..5374581 (25 bp)
AACAAGTGCGTGTACATGCTGTACT
LOC_Os06g10450
OsAffx.15352.1.S1_x_at--307--5952Chr06:5374707..5374731 (25 bp)
GAGCACGACTACTACGAGCGCGCCA
LOC_Os06g10450
OsAffx.15352.1.S1_x_at--879--9231Chr03:22055424..22055448 (25 bp)
TCCATCGCCGCGTCGCCGGTTGGCC
LOC_Os03g39720
OsAffx.15352.1.S1_x_at--1061--3993Chr11:1994109..1994133 (25 bp)
CGTCGGACCTCCTTGCGCCGGCGAC
NONE
OsAffx.15352.1.S1_x_at--208--8432Chr06:5374909..5374933 (25 bp)
GGCCGGCCCTGCACAGAGTCCAGAG
LOC_Os06g10450
OsAffx.15352.1.S1_x_at--1023--4472Chr06:5374910..5374934 (25 bp)
GCCGGCCCTGCACAGAGTCCAGAGA
LOC_Os06g10450
OsAffx.15352.1.S1_x_at--1098--4252Chr06:5374911..5374935 (25 bp)
CCGGCCCTGCACAGAGTCCAGAGAG
LOC_Os06g10450
OsAffx.15352.1.S1_x_at--246--3932Chr06:5374912..5374936 (25 bp)
CGGCCCTGCACAGAGTCCAGAGAGG
LOC_Os06g10450
OsAffx.15352.1.S1_x_at--255--8412Chr06:5374913..5374937 (25 bp)
GGCCCTGCACAGAGTCCAGAGAGGA
LOC_Os06g10450
OsAffx.15352.1.S1_x_at--636--4192Chr06:5374915..5374939 (25 bp)
CCCTGCACAGAGTCCAGAGAGGAGT
LOC_Os06g10450
Target Sequence 
GCCTTTGACAATGGCTGCTGACAGATTCTTGCACTTCGCCTCGCTCGTTTCCGTGGTGGTCTTGGCCGCCGGATCGAGAT
CGCCGGGCGGCGTGGCGGCGCTGCCGCGCCGTGGACAGCTGGTTGACGGCGGGGACAACGACAAGAACAAGTGCGTGTAC
ATGCTGTACTACATGGGGACCGGGTGGATCTGGAAGGCCGGCACGGACGCGGCGATCAGCGTGGAGCTCACGGCGGCGGA
CGGCAGCGGCTTCGCCGTCAGGGACTTGGAGCGGTGGGGCGGGCTCATGGGCGCCGAGCACGACTACTACGAGCGCGCCA
CCGCAGCGTCGCCGCCCGACCGTCGGACTTCCTCGCCCCGTGTCGTAGCCGCCGCCGCCTCTCCGCCGCCGCATCCGCGG
ACACCGCCTCGCCCTGTCGCCGCCCTCCCTTTCTCCCGTGCCTCCATCGCCGCGTCGCCGGTTGGCCGTCGGACCTCCTT
GCGCCGGCGACCTCCTCCCCACCGCCGGCCGGCCCTGCACAGAGTCCAGAGAGGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15352.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis