Browse Element(s) Details


OsAffx.15352.3.S1_at

Description tigr:9630.m03264
TID=OsAffx.15352.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3431011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34280OsAffx.28601.3.S1_x_at9/112+20502686..20503880hypothetical protein
LOC_Os02g34280OsAffx.28601.3.S1_at7/112+20502686..20503880hypothetical protein
LOC_Os02g34290OsAffx.14185.1.S1_x_at1/112+20511722..20512382hypothetical protein
LOC_Os02g34300OsAffx.25962.1.S1_at7/112+20513325..20521093transposon protein, putative, Mutator sub-class
LOC_Os02g34310OsAffx.15352.3.S1_at11/112+20523604..20525016hypothetical protein
LOC_Os02g34320OsAffx.24568.1.S1_at10/112+20529453..20532881Helix-loop-helix DNA-binding domain containing protein
LOC_Os02g34330OsAffx.32166.1218.S1_x_at3/112+20536289..20537643hypothetical protein
LOC_Os02g34340OsAffx.22699.1.S1_x_at1/112+20539250..20541612retrotransposon protein, putative, unclassified
LOC_Os02g34340OsAffx.8201.1.S1_x_at1/112+20539250..20541612retrotransposon protein, putative, unclassified
LOC_Os02g34350NANA2+20543527..20548844Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15352.3.S1_at--327--3411Chr02:20523887..20523911 (25 bp)
CAGCAGGCGTTGTATGTGAGGACCA
LOC_Os02g34310
OsAffx.15352.3.S1_at--1059--3471Chr02:20523890..20523914 (25 bp)
CAGGCGTTGTATGTGAGGACCAGCA
LOC_Os02g34310
OsAffx.15352.3.S1_at--562--771Chr02:20523900..20523924 (25 bp)
ATGTGAGGACCAGCAGGGCGAAGAA
LOC_Os02g34310
OsAffx.15352.3.S1_at--1065--3951Chr02:20524222..20524246 (25 bp)
CGGATCGAGATTGCGGGACGGCGTG
LOC_Os02g34310
OsAffx.15352.3.S1_at--1161--2131Chr02:20524346..20524370 (25 bp)
ACAGACGCGGCGGTCGATGTGGAGC
LOC_Os02g34310
OsAffx.15352.3.S1_at--397--8131Chr02:20524440..20524919 (25 bp)
GGCACGACTACTACGTTTGCAAACG
LOC_Os02g34310
OsAffx.15352.3.S1_at--419--9911Chr02:20524909..20524930 (22 bp)
TACGTTTGCAAACGGCCCGATGACT
LOC_Os02g34310
OsAffx.15352.3.S1_at--215--2391Chr02:20524915..20524939 (25 bp)
AAACGGCCCGATGACTCAGCTAATG
LOC_Os02g34310
OsAffx.15352.3.S1_at--673--671Chr02:20524925..20524949 (25 bp)
ATGACTCAGCTAATGGCCGTGGCGC
LOC_Os02g34310
OsAffx.15352.3.S1_at--546--8431Chr02:20524954..20524978 (25 bp)
GGCCTACCAGTCTACAGGCTGACAT
LOC_Os02g34310
OsAffx.15352.3.S1_at--597--1131Chr02:20524962..20524986 (25 bp)
AGTCTACAGGCTGACATCCGTAATT
LOC_Os02g34310
Target Sequence 
CAGCAGGCGTTGTATGTGAGGACCAGCAGGGCGAAGAAGACGACGGCGACGGCGACGAGGTCCTCATCCTCGAGTTGCCG
GCGAGGTTCACGTACGCGGAGCTAGAGAAGGCGAAAGCCGCCGGATCGAGATTGCGGGACGGCGTGGCGGCGCTGCCGCG
CCGTGGCCAGCTGGTTGCCGGCGGGGACAACGACAAGAACGAGCGCGTGTACACGCTGTACTTGGAGACCGGGTGGAAGG
CCGGCACAGACGCGGCGGTCGATGTGGAGCCCGCGGCGGCGGACGGCAGCGGCTTCGCCGTCGGGGACCTGGAGTGGTGG
GGCGGGCTCATGGGCGCCGGGCACGACTACTACGTTTGCAAACGGCCCGATGACTCAGCTAATGGCCGTGGCGCCCACGG
CCTACCAGTCTACAGGCTGACATCCGTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15352.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis