Browse Element(s) Details


OsAffx.15364.2.S1_at

Description tigr:9634.m01067
TID=OsAffx.15364.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=probable fucosyltransferase 2 (ec 2.4.1.-) (atfut2). (mouse-ear cress
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1095011/11Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10900OsAffx.27559.2.S1_x_at11/116+5692808..5693650scarecrow 3 protein, putative
LOC_Os06g10900OsAffx.27559.1.S1_x_at7/116+5692808..5693650scarecrow 3 protein, putative
LOC_Os06g10910Os.53557.1.S1_at11/116+5700640..5703992Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10910OsAffx.15364.2.S1_x_at1/116+5700640..5703992Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10920OsAffx.15362.1.S1_at11/116+5704392..5706867Xyloglucan fucosyltransferase family protein, expressed
LOC_Os06g10930Os.54289.1.S1_at11/116+5711155..5713609Xyloglucan fucosyltransferase family protein, expressed
LOC_Os06g10930Os.54289.1.S1_x_at11/116+5711155..5713609Xyloglucan fucosyltransferase family protein, expressed
LOC_Os06g10930OsAffx.15364.2.S1_x_at1/116+5711155..5713609Xyloglucan fucosyltransferase family protein, expressed
LOC_Os06g10940OsAffx.27143.1.S1_at11/116+5716069..5716479hypothetical protein
LOC_Os06g10950OsAffx.15364.2.S1_x_at11/116+5717734..5719699Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10950OsAffx.15364.2.S1_at11/116+5717734..5719699Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10950Os.54289.1.S1_x_at1/116+5717734..5719699Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10960OsAffx.15364.1.S1_at11/116+5720757..5725746Galactoside 2-alpha-L-fucosyltransferase, putative
LOC_Os06g10960OsAffx.15364.2.S1_x_at1/116+5720757..5725746Galactoside 2-alpha-L-fucosyltransferase, putative
LOC_Os06g10970Os.53163.1.S1_at11/116+5731122..5733055Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10970OsAffx.15364.2.S1_x_at1/116+5731122..5733055Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10980OsAffx.4795.1.S1_at11/116+5733508..5735154Xyloglucan fucosyltransferase family protein, expressed
LOC_Os06g10990Os.26715.1.S1_at11/116+5744189..5746210dnaK protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0009969biological_processxyloglucan biosynthesis
GO:0008417molecular_functionfucosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15364.2.S1_at--692--4511Chr06:5718292..5718316 (25 bp)
GCCGAAGCTGCTTGATCAGATCACC
LOC_Os06g10950
OsAffx.15364.2.S1_at--236--5411Chr06:5718289..5718313 (25 bp)
GAAGCTGCTTGATCAGATCACCACG
LOC_Os06g10950
OsAffx.15364.2.S1_at--149--411Chr06:5718278..5718302 (25 bp)
ATCAGATCACCACGTGCACGCAGAA
LOC_Os06g10950
OsAffx.15364.2.S1_at--875--1271Chr06:5718275..5718299 (25 bp)
AGATCACCACGTGCACGCAGAAGGA
LOC_Os06g10950
OsAffx.15364.2.S1_at--827--391Chr06:5718273..5718297 (25 bp)
ATCACCACGTGCACGCAGAAGGAGA
LOC_Os06g10950
OsAffx.15364.2.S1_at--896--4351Chr06:5718269..5718293 (25 bp)
CCACGTGCACGCAGAAGGAGAAGCT
LOC_Os06g10950
OsAffx.15364.2.S1_at--70--1731Chr06:5718056..5718080 (25 bp)
ACCAGCGGTTCGGTGCCAGGTCGCA
LOC_Os06g10950
OsAffx.15364.2.S1_at--766--10611Chr06:5718048..5718072 (25 bp)
TTCGGTGCCAGGTCGCACGACGGCA
LOC_Os06g10950
OsAffx.15364.2.S1_at--527--911Chr06:5717805..5717829 (25 bp)
AGGCTGAAGCGTGGCGCGGACACCG
LOC_Os06g10950
OsAffx.15364.2.S1_at--862--1631Chr06:5717798..5717822 (25 bp)
AGCGTGGCGCGGACACCGGGAAGAT
LOC_Os06g10950
OsAffx.15364.2.S1_at--659--8191Chr06:5717780..5717804 (25 bp)
GGAAGATGGTGCCGCACGTCCGGCA
LOC_Os06g10950
Target Sequence 
GCCGAAGCTGCTTGATCAGATCACCACGTGCACGCAGAAGGAGAAGCTGCTCCCGGAGGTGATCGCCGCCGGAGAGCCCC
CCGTCGTCGACGTCGCGCCGGCGAACTCCAAGTCCAAAGCCGTGCTCGTCACCTCGCTCAAGTCGTGGTACTACGAGAAG
ATGAAGAGCATGTACTGGGAGCACGCGACGGCCACCGGCGAGGCGGTGAGCGTGCACCAGCCGAGCCACGAGGAGTACCA
GCGGTTCGGTGCCAGGTCGCACGACGGCAAGGCGTGGGCGGAGATATACCTGCTCAGCCTCTCCGACGCGCTGGTGACCA
GCGGGTGGTCGACGTTCGGGTACGTGGCGCAGGGGCTCGCCGGGCTGACGCCGTGGGTGATGCACAAGCCGGCGAACGAC
ACCGCGGCCGCGGCGGGCGACGACCCGCCGTGCCGGCGGGACGTGTCCATGGAGCCGTGCTTCCACGCGCCGCCGTTCTA
CGACTGCAGGCTGAAGCGTGGCGCGGACACCGGGAAGATGGTGCCGCACGTCCGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15364.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis