Browse Element(s) Details

OsAffx.15364.2.S1_x_at

Description

tigr:9634.m01067
TID=OsAffx.15364.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=probable fucosyltransferase 2 (ec 2.4.1.-) (atfut2). (mouse-ear cress
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g10950	11/11	Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os02g52630	2/11	fucosyltransferase 7, putative, expressed
LOC_Os06g10970	1/11	Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os02g17600	1/11	Galactoside 2-alpha-L-fucosyltransferase, putative
LOC_Os06g10960	1/11	Galactoside 2-alpha-L-fucosyltransferase, putative
LOC_Os07g46380	1/11	glycosyltransferase, putative, expressed
LOC_Os02g17534	1/11	Xyloglucan fucosyltransferase family protein, expressed
LOC_Os02g52590	1/11	Xyloglucan fucosyltransferase family protein, expressed
LOC_Os06g10930	1/11	Xyloglucan fucosyltransferase family protein, expressed
LOC_Os06g10910	1/11	Galactoside 2-alpha-L-fucosyltransferase, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g10900	OsAffx.27559.2.S1_x_at	11/11	6	+	5692808..5693650	scarecrow 3 protein, putative
LOC_Os06g10900	OsAffx.27559.1.S1_x_at	7/11	6	+	5692808..5693650	scarecrow 3 protein, putative
LOC_Os06g10910	Os.53557.1.S1_at	11/11	6	+	5700640..5703992	Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10910	OsAffx.15364.2.S1_x_at	1/11	6	+	5700640..5703992	Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10920	OsAffx.15362.1.S1_at	11/11	6	+	5704392..5706867	Xyloglucan fucosyltransferase family protein, expressed
LOC_Os06g10930	Os.54289.1.S1_at	11/11	6	+	5711155..5713609	Xyloglucan fucosyltransferase family protein, expressed
LOC_Os06g10930	Os.54289.1.S1_x_at	11/11	6	+	5711155..5713609	Xyloglucan fucosyltransferase family protein, expressed
LOC_Os06g10930	OsAffx.15364.2.S1_x_at	1/11	6	+	5711155..5713609	Xyloglucan fucosyltransferase family protein, expressed
LOC_Os06g10940	OsAffx.27143.1.S1_at	11/11	6	+	5716069..5716479	hypothetical protein
LOC_Os06g10950	OsAffx.15364.2.S1_x_at	11/11	6	+	5717734..5719699	Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10950	OsAffx.15364.2.S1_at	11/11	6	+	5717734..5719699	Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10950	Os.54289.1.S1_x_at	1/11	6	+	5717734..5719699	Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10960	OsAffx.15364.1.S1_at	11/11	6	+	5720757..5725746	Galactoside 2-alpha-L-fucosyltransferase, putative
LOC_Os06g10960	OsAffx.15364.2.S1_x_at	1/11	6	+	5720757..5725746	Galactoside 2-alpha-L-fucosyltransferase, putative
LOC_Os06g10970	Os.53163.1.S1_at	11/11	6	+	5731122..5733055	Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10970	OsAffx.15364.2.S1_x_at	1/11	6	+	5731122..5733055	Galactoside 2-alpha-L-fucosyltransferase, putative, expressed
LOC_Os06g10980	OsAffx.4795.1.S1_at	11/11	6	+	5733508..5735154	Xyloglucan fucosyltransferase family protein, expressed
LOC_Os06g10990	Os.26715.1.S1_at	11/11	6	+	5744189..5746210	dnaK protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0009832	biological_process	cell wall biosynthesis (sensu Magnoliophyta)
GO:0009969	biological_process	xyloglucan biosynthesis
GO:0008417	molecular_function	fucosyltransferase activity
GO:0016757	molecular_function	transferase activity, transferring glycosyl groups

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.15364.2.S1_x_at--691--451	1	Chr06:5718292..5718316 (25 bp)	GCCGAAGCTGCTTGATCAGATCACC	LOC_Os06g10950
OsAffx.15364.2.S1_x_at--876--127	1	Chr06:5718275..5718299 (25 bp)	AGATCACCACGTGCACGCAGAAGGA	LOC_Os06g10950
OsAffx.15364.2.S1_x_at--215--269	2	Chr07:27676684..27676706 (22 bp)	AAGCTGCTCCCGGAGGTGATCGCCG	LOC_Os07g46380
OsAffx.15364.2.S1_x_at--275--547	1	Chr06:5718190..5718214 (25 bp)	GAACTCCAAGTCCAAAGCCGTGCTC	LOC_Os06g10950
OsAffx.15364.2.S1_x_at--710--899	1	Chr06:5718131..5718155 (25 bp)	TGAAGAGCATGTACTGGGAGCACGC	LOC_Os06g10950
OsAffx.15364.2.S1_x_at--1153--891	6	Chr06:5703551..5703575 (25 bp)	TGAGCGTGCACCAGCCGAGCCACGA	LOC_Os06g10910
OsAffx.15364.2.S1_x_at--69--173	1	Chr06:5718056..5718080 (25 bp)	ACCAGCGGTTCGGTGCCAGGTCGCA	LOC_Os06g10950
OsAffx.15364.2.S1_x_at--765--1061	1	Chr06:5718048..5718072 (25 bp)	TTCGGTGCCAGGTCGCACGACGGCA	LOC_Os06g10950
OsAffx.15364.2.S1_x_at--518--811	5	Chr06:5725599..5725623 (25 bp)	GGACGTGTCCATGGAGCCGTGCTTC	LOC_Os06g10960
OsAffx.15364.2.S1_x_at--670--673	1	Chr06:5717818..5717842 (25 bp)	GTTCTACGACTGCAGGCTGAAGCGT	LOC_Os06g10950
OsAffx.15364.2.S1_x_at--214--177	1	Chr06:5717784..5717808 (25 bp)	ACCGGGAAGATGGTGCCGCACGTCC	LOC_Os06g10950

Target Sequence

GCCGAAGCTGCTTGATCAGATCACCACGTGCACGCAGAAGGAGAAGCTGCTCCCGGAGGTGATCGCCGCCGGAGAGCCCC
CCGTCGTCGACGTCGCGCCGGCGAACTCCAAGTCCAAAGCCGTGCTCGTCACCTCGCTCAAGTCGTGGTACTACGAGAAG
ATGAAGAGCATGTACTGGGAGCACGCGACGGCCACCGGCGAGGCGGTGAGCGTGCACCAGCCGAGCCACGAGGAGTACCA
GCGGTTCGGTGCCAGGTCGCACGACGGCAAGGCGTGGGCGGAGATATACCTGCTCAGCCTCTCCGACGCGCTGGTGACCA
GCGGGTGGTCGACGTTCGGGTACGTGGCGCAGGGGCTCGCCGGGCTGACGCCGTGGGTGATGCACAAGCCGGCGAACGAC
ACCGCGGCCGCGGCGGGCGACGACCCGCCGTGCCGGCGGGACGTGTCCATGGAGCCGTGCTTCCACGCGCCGCCGTTCTA
CGACTGCAGGCTGAAGCGTGGCGCGGACACCGGGAAGATGGTGCCGCACGTCC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis