Browse Element(s) Details


OsAffx.15371.1.S1_at

Description tigr:9634.m01125
TID=OsAffx.15371.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1152011/11LMBR1 integral membrane family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11480OsAffx.22608.4.A1_at11/116+6080890..6082448hypothetical protein
LOC_Os06g11490Os.7743.1.S1_at11/116+6085799..6087223Plastocyanin-like domain containing protein, expressed
LOC_Os06g11500Os.7743.2.S1_at11/116+6086259..6096661MCM2/3/5 family protein, expressed
LOC_Os06g11500Os.7743.2.S1_x_at11/116+6086259..6096661MCM2/3/5 family protein, expressed
LOC_Os06g11500Os.7743.2.S2_at10/116+6086259..6096661MCM2/3/5 family protein, expressed
LOC_Os06g11510Os.32434.1.S1_at11/116+6100062..6101117expressed protein
LOC_Os06g11520OsAffx.15371.1.S1_at11/116+6101314..6107980LMBR1 integral membrane family protein, putative, expressed
LOC_Os06g11530NANA6+6113818..6114646retrotransposon protein, putative, unclassified
LOC_Os06g11540NANA6+6115561..6118485retrotransposon protein, putative, unclassified
LOC_Os06g11550NANA6+6121038..6122369retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g11560NANA6+6126033..6128402retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g11570Os.14919.1.S1_at7/116+6130904..6136479SWIM zinc finger family protein
LOC_Os06g11570Os.56216.1.S1_at2/116+6130904..6136479SWIM zinc finger family protein
LOC_Os06g11570OsAffx.29313.1.S1_at1/116+6130904..6136479SWIM zinc finger family protein

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Gene Ontology Classification
GO idTypeName
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15371.1.S1_at--734--1451Chr06:6101784..6101808 (25 bp)
AGAAGTTTCTTCCTTTGAGCCTGTC
LOC_Os06g11520
OsAffx.15371.1.S1_at--126--8931Chr06:6101769..6101793 (25 bp)
TGAGCCTGTCATCAACACAATCGTC
LOC_Os06g11520
OsAffx.15371.1.S1_at--847--3291Chr06:6101754..6101778 (25 bp)
CACAATCGTCTAGTTCAGGGTCGCT
LOC_Os06g11520
OsAffx.15371.1.S1_at--363--10531Chr06:6101741..6101765 (25 bp)
TTCAGGGTCGCTTGATGAGATCTTC
LOC_Os06g11520
OsAffx.15371.1.S1_at--282--9571Chr06:6101721..6101745 (25 bp)
TCTTCGAGGGACTTAAACGGCATTC
LOC_Os06g11520
OsAffx.15371.1.S1_at--547--3011Chr06:6101692..6101716 (25 bp)
AATGCAAGTGTGGATTACCTCGACG
LOC_Os06g11520
OsAffx.15371.1.S1_at--804--5731Chr06:6101662..6101686 (25 bp)
GACGGCATTTAGTGACATGAATCCA
LOC_Os06g11520
OsAffx.15371.1.S1_at--631--9851Chr06:6101527..6101551 (25 bp)
TACAAAATTAGCAGGCGTCCTCCCT
LOC_Os06g11520
OsAffx.15371.1.S1_at--649--911Chr06:6101453..6101477 (25 bp)
AGGCTTAAGCGCTGTAGGTGATTTT
LOC_Os06g11520
OsAffx.15371.1.S1_at--707--3971Chr06:6101386..6101410 (25 bp)
CGGTCCTGTGCGTGCAAGGTCATAG
LOC_Os06g11520
OsAffx.15371.1.S1_at--868--2891Chr06:6101371..6101395 (25 bp)
AAGGTCATAGGTTCTCGCCGCGAAG
LOC_Os06g11520
Target Sequence 
AGAAGTTTCTTCCTTTGAGCCTGTCATCAACACAATCGTCTAGTTCAGGGTCGCTTGATGAGATCTTCGAGGGACTTAAA
CGGCATTCAAGCAATGCAAGTGTGGATTACCTCGACGATGATGACGGCATTTAGTGACATGAATCCAAAGATTCAAAGAT
CCTAATAGAACGTTAGTAAAGGAGTACAGAATGAAGATGCAGAATGTACAGCAGTTCTTCAAAAAATGGCATAGAATGTA
GGCCCTAATAGAATGTATACAAAATTAGCAGGCGTCCTCCCTTTCTAAGAAAAGAGAGGAGGATATAGTATAGCATACAA
AGTACTCCTATAGGCTTAAGCGCTGTAGGTGATTTTGGGAAGCTGTAATCATGGAGGTCTGACGTGATGAGCGCTGAGCG
GTCCTGTGCGTGCAAGGTCATAGGTTCTCGCCGCGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15371.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis