Browse Element(s) Details


OsAffx.15397.1.S1_x_at

Description tigr:9634.m01271
TID=OsAffx.15397.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g699801/11TCP family transcription factor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g69950Os.51456.1.S1_at11/111+40780707..4078352850S ribosomal protein L27, chloroplast precursor, putative, expressed
LOC_Os01g69950Os.4997.1.S1_s_at11/111+40780707..4078352850S ribosomal protein L27, chloroplast precursor, putative, expressed
LOC_Os01g69950Os.46403.1.S1_at8/111+40780707..4078352850S ribosomal protein L27, chloroplast precursor, putative, expressed
LOC_Os01g69960Os.23498.1.S1_at11/111+40786850..40788332expressed protein
LOC_Os01g69970Os.6419.1.S1_at11/111+40789858..40794608Periodic tryptophan protein 1 homolog, putative, expressed
LOC_Os01g69980Os.12146.1.S1_at10/111+40804089..40805984TCP family transcription factor containing protein, expressed
LOC_Os01g69980OsAffx.15397.1.S1_x_at1/111+40804089..40805984TCP family transcription factor containing protein, expressed
LOC_Os01g69984Os.51027.1.S1_at10/111+40805985..40806305NA
LOC_Os01g69990Os.17442.1.S1_at10/111+40810155..40816509GYF domain containing protein, expressed
LOC_Os01g70000Os.55300.1.S1_at11/111+40820543..40822563expressed protein
LOC_Os01g70010OsAffx.11801.1.S1_at11/111+40822975..4082512860S ribosomal protein L7a, putative, expressed
LOC_Os01g70020Os.18596.1.S1_at11/111+40827996..40834366expressed protein
LOC_Os01g70020Os.50767.1.S1_x_at11/111+40827996..40834366expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009653biological_processmorphogenesis
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15397.1.S1_x_at--98--5931Chr06:7017792..7017816 (25 bp)
GAGCAGGTGAGCTCGTTGGCGGCGG
NONE
OsAffx.15397.1.S1_x_at--110--8491Chr06:7017731..7017755 (25 bp)
TGGCGGCCCTGGATCCGGAGGCAGA
NONE
OsAffx.15397.1.S1_x_at--1132--8251Chr06:7017712..7017736 (25 bp)
GGCAGAGCAACGGAGGCAAATATCA
NONE
OsAffx.15397.1.S1_x_at--956--5151Chr06:7017706..7017730 (25 bp)
GCAACGGAGGCAAATATCAATCGAT
NONE
OsAffx.15397.1.S1_x_at--682--8231Chr06:7017590..7017722 (25 bp)
GGCAAATATCAATCGATCGTGGCAC
NONE
OsAffx.15397.1.S1_x_at--506--3112Chr01:31758614..31758682 (25 bp)
AATATCAATCGATCGTGGCACGGAT
NONE
OsAffx.15397.1.S1_x_at--668--9731Chr06:7017582..7017714 (25 bp)
TCAATCGATCGTGGCACGGATTCTA
NONE
OsAffx.15397.1.S1_x_at--61--511Chr06:7017575..7017596 (22 bp)
ATCGTGGCACGGATTCTATGTGGCG
NONE
OsAffx.15397.1.S1_x_at--14--3951Chr06:7017516..7017540 (25 bp)
CGGCTCTCTTCGGAGGAGGATTCTA
NONE
OsAffx.15397.1.S1_x_at--1025--991Chr06:7017500..7017524 (25 bp)
AGGATTCTATGTGGCGGCGGCTCTC
NONE
OsAffx.15397.1.S1_x_at--111--8492Chr01:40805012..40805333 (25 bp)
TGGCGGCGGCTCTCTTCGGAGGAGA
LOC_Os01g69980
Target Sequence 
GAGCAGGTGAGCTCGTTGGCGGCGGCGGTGGCCGGGTGGACGGTGAGAGCGCGGCGGAGGGTGGCGGCCCTGGATCCGGA
GGCAGAGCAACGGAGGCAAATATCAATCGATCGTGGCACGGATTCTATGTGGCGGCGGCTCTCTTCGGAGGAGGATTCTA
TGTGGCGGCGGCTCTCTTCGGAGGAGGATTCTATGTGGCGGCGGCTCTCTTCGGAGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15397.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis