Browse Element(s) Details


OsAffx.15403.1.S1_at

Description tigr:9634.m01302
TID=OsAffx.15403.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1312011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13080OsAffx.4822.1.S1_at11/116+7180703..7182460U-box domain containing protein, expressed
LOC_Os06g13090NANA6+7185602..7187077U-box domain containing protein, expressed
LOC_Os06g13100OsAffx.27601.1.S1_at11/116+7187425..7190424CREG1 protein precursor, putative, expressed
LOC_Os06g13100Os.15218.1.S1_at11/116+7187425..7190424CREG1 protein precursor, putative, expressed
LOC_Os06g13110OsAffx.27658.1.S1_at8/116+7195592..7200418retrotransposon protein, putative, unclassified
LOC_Os06g13120OsAffx.15403.1.S1_at11/116+7200592..7202995hypothetical protein
LOC_Os06g13130NANA6+7204228..7204818hypothetical protein
LOC_Os06g13140OsAffx.27602.1.S1_at10/116+7208517..7211491transducin family protein, putative, expressed
LOC_Os06g13150OsAffx.27603.1.S1_at11/116+7215474..7216002hypothetical protein
LOC_Os06g13160Os.54594.1.S1_at11/116+7217854..7219284Plant viral-response family protein, expressed
LOC_Os06g13170Os.53308.1.A1_at7/116+7220866..7223018methyltransferase GidB family protein
LOC_Os06g13180OsAffx.27604.1.S1_x_at11/116+7223985..7225100Matrixin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15403.1.S1_at--197--8231Chr06:7201175..7201199 (25 bp)
GGCAATGCAATTATCATCTCCTGTC
LOC_Os06g13120
OsAffx.15403.1.S1_at--239--2471Chr06:7201101..7201125 (25 bp)
AACACCTCTAGATGTTGCCTTCAAC
LOC_Os06g13120
OsAffx.15403.1.S1_at--62--6691Chr06:7201088..7201112 (25 bp)
GTTGCCTTCAACAAGAGCACTCGTT
LOC_Os06g13120
OsAffx.15403.1.S1_at--314--9511Chr06:7200953..7200977 (25 bp)
TCTCTAGTACCAGCATCACCATGTG
LOC_Os06g13120
OsAffx.15403.1.S1_at--855--391Chr06:7200939..7200963 (25 bp)
ATCACCATGTGCCTACAAGCTTGTA
LOC_Os06g13120
OsAffx.15403.1.S1_at--183--931Chr06:7200860..7200884 (25 bp)
AGGAGGAATCAAGCGTTTACACCAA
LOC_Os06g13120
OsAffx.15403.1.S1_at--727--731Chr06:7200817..7200841 (25 bp)
ATGTATCTCCGTACTAATCGCAGCA
LOC_Os06g13120
OsAffx.15403.1.S1_at--58--7991Chr06:7200739..7200763 (25 bp)
GGATGCTGGCATGCCATTGCTCAAA
LOC_Os06g13120
OsAffx.15403.1.S1_at--591--3151Chr06:7200704..7200728 (25 bp)
AATTCTCGAGCTACGTGGCTGCAAA
LOC_Os06g13120
OsAffx.15403.1.S1_at--641--6731Chr06:7200670..7200694 (25 bp)
GTTCTATTGCTCCACATTTGCGACA
LOC_Os06g13120
OsAffx.15403.1.S1_at--1102--191Chr06:7200655..7200679 (25 bp)
ATTTGCGACATGTCTGCTTGTGCAT
LOC_Os06g13120
Target Sequence 
GGCAATGCAATTATCATCTCCTGTCTTATGATGAATACTAGAGTGAATCTCAGCATTATTAACCATGGGGGATCAACACC
TCTAGATGTTGCCTTCAACAAGAGCACTCGTTATTATTCATTATCATGGCTCTCTAGTACCAGCATCACCATGTGCCTAC
AAGCTTGTAATGCTTATACCAGCAGATTCCTAAATCGAGCTGATAAGAGGTTCTTGGAAGACAAGGAGGAATCAAGCGTT
TACACCAATGTGTCCCAAAGTATCTTATGTATCTCCGTACTAATCGCAGCAGGTTCATTTGCTGCTGCTTTCACTCCTCC
TGGGGGATACATTGCAGACGGTGAGGATGCTGGCATGCCATTGCTCAAAGAATATGCTGAATTCTCGAGCTACGTGGCTG
CAAATAGCATGTCGTTCTATTGCTCCACATTTGCGACATGTCTGCTTGTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15403.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis