Browse Element(s) Details


OsAffx.15457.1.S1_at

Description tigr:9634.m01645
TID=OsAffx.15457.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1636011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16330Os.20348.1.S1_at11/116+9314992..9322904BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os06g16330Os.52743.1.S1_at11/116+9314992..9322904BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os06g16340OsAffx.15456.1.S1_at11/116+9323263..9324420hypothetical protein
LOC_Os06g16340OsAffx.28592.1.S1_at2/116+9323263..9324420hypothetical protein
LOC_Os06g16340OsAffx.12284.1.S1_x_at1/116+9323263..9324420hypothetical protein
LOC_Os06g16350Os.1131.1.S1_at11/116+9325054..9327207Peroxidase 11 precursor, putative, expressed
LOC_Os06g16350Os.1131.2.S1_x_at11/116+9325054..9327207Peroxidase 11 precursor, putative, expressed
LOC_Os06g16360OsAffx.15457.1.S1_at11/116+9332214..9332864hypothetical protein
LOC_Os06g16370Os.1189.1.S1_at11/116+9335377..9337570Hd1, putative, expressed
LOC_Os06g16380NANA6+9348328..9349580hypothetical protein
LOC_Os06g16390Os.44686.2.S1_x_at11/116+9352714..9361033Polycomb protein EZ1, putative, expressed
LOC_Os06g16390Os.44686.1.S1_at9/116+9352714..9361033Polycomb protein EZ1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15457.1.S1_at--254--451Chr06:9332789..9332813 (25 bp)
ATCTCGACGTCACACATCATTGATG
LOC_Os06g16360
OsAffx.15457.1.S1_at--1013--1151Chr06:9332744..9332768 (25 bp)
AGTACAGTTGTTGTCACCTGGGCGA
LOC_Os06g16360
OsAffx.15457.1.S1_at--935--8111Chr06:9332691..9332715 (25 bp)
GGACGTCGAGTGTGCTATTGCCTAT
LOC_Os06g16360
OsAffx.15457.1.S1_at--288--10231Chr06:9332676..9332700 (25 bp)
TATTGCCTATGAGTTCGGTCTATGC
LOC_Os06g16360
OsAffx.15457.1.S1_at--654--8011Chr06:9332619..9332643 (25 bp)
GGAGGCTTTCCTCCTCAAGTACAAG
LOC_Os06g16360
OsAffx.15457.1.S1_at--44--1091Chr06:9332563..9332587 (25 bp)
AGGGCTTCGCTAAAGGCCACGGGAT
LOC_Os06g16360
OsAffx.15457.1.S1_at--83--511Chr06:9332540..9332564 (25 bp)
ATCGAGGTCCACTTCATCCAATGTT
LOC_Os06g16360
OsAffx.15457.1.S1_at--440--7471Chr06:9332439..9332463 (25 bp)
GTGGGCACTGGACATTAACATTCAA
LOC_Os06g16360
OsAffx.15457.1.S1_at--1048--3971Chr06:9332399..9332423 (25 bp)
CGGGACATTGACATTCTCCGAATCA
LOC_Os06g16360
OsAffx.15457.1.S1_at--192--2771Chr06:9332300..9332324 (25 bp)
CAAGACGGCGTATGGTTGAACCTAA
LOC_Os06g16360
OsAffx.15457.1.S1_at--1048--2791Chr06:9332253..9332277 (25 bp)
AAGATCGGCCTACAGACTCCAATTC
LOC_Os06g16360
Target Sequence 
ATCTCGACGTCACACATCATTGATGGGGAGCTACGCGAAATGGAAAGTACAGTTGTTGTCACCTGGGCGATGCGCGCCCC
GCCGTCGGTCACGGCAAAGGACGTCGAGTGTGCTATTGCCTATGAGTTCGGTCTATGCATCAGCGAGCTGACGGTGTCGC
TGCACTTCCCGGAGGCTTTCCTCCTCAAGTACAAGCACCGCCGCCATTGCGAGGAGACGGTGAAGCAGGGCTTCGCTAAA
GGCCACGGGATCGAGGTCCACTTCATCCAATGTTGTAGCTTGAAAAATGCCACCGGCTCGGCCCTCATGTACAGAGTCAA
GCTCTGTCTCGACGGCGTGCCGATGCACCTGTGGGCACTGGACATTAACATTCAAGAGAGTAATTGGATACGGGACATTG
ACATTCTCCGAATCACAACGGTGGAACATATCCAACAATTTGTGCATTTATGGTCAATGATCAGAAGAATGAACCAGCTG
AATGATGAACAAGACGGCGTATGGTTGAACCTAACAGCAAACAGGCAATACTTGGCAAGATCGGCCTACAGACTCCAATT
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15457.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis