Browse Element(s) Details


OsAffx.15476.1.S1_at

Description tigr:9634.m01766
TID=OsAffx.15476.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1751010/11hypothetical protein
LOC_Os07g229601/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g17460OsAffx.15475.1.S1_at11/116+10130034..10130805Fasciclin domain containing protein
LOC_Os06g17470OsAffx.27686.1.S1_at11/116+10134169..10134609hypothetical protein
LOC_Os06g17480Os.9495.1.S1_at11/116+10136824..10137874Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os06g17480OsAffx.23994.1.S1_x_at1/116+10136824..10137874Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os06g17490Os.52453.1.S1_at11/116+10145844..10148403Protein kinase domain containing protein, expressed
LOC_Os06g17500Os.37806.1.S1_at11/116+10148827..10151293expressed protein
LOC_Os06g17510OsAffx.15476.1.S1_at10/116+10154244..10155769hypothetical protein
LOC_Os06g17520Os.45173.1.S1_x_at2/116+10157496..10164259retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g17530OsAffx.15708.1.S1_at1/116+10167714..10169371retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g17530Os.49936.2.A1_at1/116+10167714..10169371retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g17530Os.26999.1.A1_at1/116+10167714..10169371retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g17540OsAffx.21779.1.S1_at2/116+10171850..10172653Zinc knuckle family protein
LOC_Os06g17550NANA6+10177767..10178313retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15476.1.S1_at--452--2671Chr06:10154733..10154757 (25 bp)
AAGCCCTGCGAGTATATGGTACCCA
LOC_Os06g17510
OsAffx.15476.1.S1_at--1064--10411Chr06:10154690..10154714 (25 bp)
TTATAATTTTGTCGGCGCATCTTCG
LOC_Os06g17510
OsAffx.15476.1.S1_at--688--5111Chr06:10154666..10154690 (25 bp)
GCACTACACACCATTGCATGCTAAT
LOC_Os06g17510
OsAffx.15476.1.S1_at--721--2971Chr06:10154644..10154668 (25 bp)
AATGGTTATTCAACACTGCTTGCTC
LOC_Os06g17510
OsAffx.15476.1.S1_at--26--2192Chr03:691468..691651 (25 bp)
ACACTGCTTGCTCATGATGGTTCTT
NONE
OsAffx.15476.1.S1_at--876--8571Chr06:10154615..10154639 (25 bp)
TGGTTCTTCTGTGCCGCTTGCGAAA
LOC_Os06g17510
OsAffx.15476.1.S1_at--363--2051Chr06:10154587..10154611 (25 bp)
ACTTCATCCGCACTTACTGGGAACA
LOC_Os06g17510
OsAffx.15476.1.S1_at--1127--691Chr06:10154538..10154562 (25 bp)
ATGATGACAATGGTGCCGTTCGGAC
LOC_Os06g17510
OsAffx.15476.1.S1_at--952--7271Chr06:10154526..10154550 (25 bp)
GTGCCGTTCGGACCAGATTGAAGCT
LOC_Os06g17510
OsAffx.15476.1.S1_at--260--1652Chr07:12943470..12943494 (25 bp)
AGCCCAAAGCAAGCCAAGGAGCGTT
LOC_Os07g22960
OsAffx.15476.1.S1_at--71--8511Chr06:10154160..10154184 (25 bp)
TGGCACAAACTCAACACTCGGAAGG
NONE
Target Sequence 
AAGCCCTGCGAGTATATGGTACCCATAATATCCACACCCAACATTATAATTTTGTCGGCGCATCTTCGCACTACACACCA
TTGCATGCTAATGGTTATTCAACACTGCTTGCTCATGATGGTTCTTCTGTGCCGCTTGCGAAACCCACTTCATCCGCACT
TACTGGGAACAATGACCATGTCACTGTTGATAGTGATGATGACAATGGTGCCGTTCGGACCAGATTGAAGCTAAATTGGA
TCCAAGAGGAGGATGTTAGACTGATGAGTGTTTGGTTGAACAATTCAATGGACCCAATTAATGGGAATGATAAGAAGGCT
GAAAAATATTGGGGAGATGGAGAAGAGATGGAGAAGCCCAAAGCAAGCCAAGGAGCGTTGGCACAAACTCAACACTCGGA
AGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15476.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis