Browse Element(s) Details


OsAffx.15510.1.S1_at

Description tigr:9634.m01947
TID=OsAffx.15510.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2006011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g20030Os.49962.1.S1_at11/116+11482109..11485822group II intron splicing factor CRS1, putative, expressed
LOC_Os06g20030Os.39087.1.S1_at1/116+11482109..11485822group II intron splicing factor CRS1, putative, expressed
LOC_Os06g20040Os.50300.1.S1_at11/116+11485981..11493270Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g20040Os.50300.1.S1_s_at11/116+11485981..11493270Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g20040Os.17403.1.S1_a_at1/116+11485981..11493270Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g20050NANA6+11497993..11502824NB-ARC domain containing protein
LOC_Os06g20060OsAffx.15510.1.S1_at11/116+11503386..11506370expressed protein
LOC_Os06g20070OsAffx.4878.1.S1_at11/116+11508924..11509777hypothetical protein
LOC_Os06g20080OsAffx.4153.1.S1_s_at3/116+11511038..11511710hypothetical protein
LOC_Os06g20080Os.12293.1.S1_a_at1/116+11511038..11511710hypothetical protein
LOC_Os06g20090Os.38062.1.S1_at11/116+11514409..11524786non-repetitive/WGA-negative nucleoporin family protein, putative, expressed
LOC_Os06g20090OsAffx.20517.1.S1_at2/116+11514409..11524786non-repetitive/WGA-negative nucleoporin family protein, putative, expressed
LOC_Os06g20100OsAffx.27724.1.S1_at11/116+11527811..11528314hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15510.1.S1_at--319--231Chr06:11505072..11505096 (25 bp)
ATATTCCCGGGTCGAGGAACGCTGC
LOC_Os06g20060
OsAffx.15510.1.S1_at--994--8171Chr06:11505057..11505081 (25 bp)
GGAACGCTGCCTTGGACCTTATTGA
LOC_Os06g20060
OsAffx.15510.1.S1_at--720--5231Chr06:11505024..11505048 (25 bp)
GAATAGTCATGAATTGCCGCGTAGA
LOC_Os06g20060
OsAffx.15510.1.S1_at--93--3171Chr06:11505013..11505037 (25 bp)
AATTGCCGCGTAGATTGGTTCATGA
LOC_Os06g20060
OsAffx.15510.1.S1_at--1118--5651Chr06:11504338..11504362 (25 bp)
GACAGGTTACCCATATACAGATCAA
LOC_Os06g20060
OsAffx.15510.1.S1_at--149--5531Chr06:11504290..11504314 (25 bp)
GAAAAGCACACGCACCATTGACTGG
LOC_Os06g20060
OsAffx.15510.1.S1_at--229--1851Chr06:11504281..11504305 (25 bp)
ACGCACCATTGACTGGTTGGCCATA
LOC_Os06g20060
OsAffx.15510.1.S1_at--50--7931Chr06:11504267..11504291 (25 bp)
GGTTGGCCATAAGAACTCTGACAGT
LOC_Os06g20060
OsAffx.15510.1.S1_at--137--2271Chr06:11503465..11503595 (25 bp)
AAATCTGGTGTTCGCAGGGAGTCCT
LOC_Os06g20060
OsAffx.15510.1.S1_at--1054--1051Chr06:11503450..11503474 (25 bp)
AGGGAGTCCTTCCACTTGCTTGGCT
LOC_Os06g20060
OsAffx.15510.1.S1_at--394--10871Chr06:11503431..11503455 (25 bp)
TTGGCTGCCTTGGAGCATTCATCCA
LOC_Os06g20060
Target Sequence 
ATATTCCCGGGTCGAGGAACGCTGCCTTGGACCTTATTGATATACAACGAATAGTCATGAATTGCCGCGTAGATTGGTTC
ATGAAGCGAACCGTGCCGTCATCCTCAGGGAGGAGGTACTCAGAACAGGTGACAGGTTACCCATATACAGATCAAATAGC
ATTAAAAATTGTCGAGGAGAAAAGCACACGCACCATTGACTGGTTGGCCATAAGAACTCTGACAGTAACAGCTGAAATCT
GGTGTTCGCAGGGAGTCCTTCCACTTGCTTGGCTGCCTTGGAGCATTCATCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15510.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis