Browse Element(s) Details

OsAffx.15536.1.S1_x_at

Description

tigr:9634.m02101
TID=OsAffx.15536.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g21460	11/11	retrotransposon protein, putative, unclassified
LOC_Os01g32510	1/11	transposon protein, putative, unclassified
LOC_Os06g34310	1/11	Zinc knuckle family protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g21420	Os.40855.2.S1_x_at	10/11	6	+	12374748..12377078	hypothetical protein
LOC_Os06g21420	Os.40855.4.S1_x_at	4/11	6	+	12374748..12377078	hypothetical protein
LOC_Os06g21420	Os.40855.4.S1_at	1/11	6	+	12374748..12377078	hypothetical protein
LOC_Os06g21420	Os.40360.1.S1_x_at	1/11	6	+	12374748..12377078	hypothetical protein
LOC_Os06g21430	Os.40855.2.S1_x_at	9/11	6	+	12383026..12386358	hypothetical protein
LOC_Os06g21430	Os.40360.1.S1_at	9/11	6	+	12383026..12386358	hypothetical protein
LOC_Os06g21430	Os.40360.1.S1_x_at	6/11	6	+	12383026..12386358	hypothetical protein
LOC_Os06g21430	Os.40855.5.S1_x_at	3/11	6	+	12383026..12386358	hypothetical protein
LOC_Os06g21430	Os.40855.4.S1_x_at	2/11	6	+	12383026..12386358	hypothetical protein
LOC_Os06g21430	Os.40855.4.S1_at	1/11	6	+	12383026..12386358	hypothetical protein
LOC_Os06g21440	OsAffx.21161.1.S1_at	1/11	6	+	12391026..12395775	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g21450	OsAffx.13200.2.S1_x_at	11/11	6	+	12396662..12397075	retrotransposon protein, putative, unclassified
LOC_Os06g21460	OsAffx.15536.1.S1_x_at	11/11	6	+	12399399..12400852	retrotransposon protein, putative, unclassified
LOC_Os06g21470	Os.27678.1.S1_at	11/11	6	+	12402832..12409354	Poly polymerase central domain containing protein, expressed
LOC_Os06g21470	Os.21194.1.S1_at	10/11	6	+	12402832..12409354	Poly polymerase central domain containing protein, expressed
LOC_Os06g21480	Os.18173.1.S1_at	11/11	6	+	12411526..12414342	60S ribosomal protein L31, putative, expressed
LOC_Os06g21489	NA	NA	6	+	12415302..12417472	transposon protein, putative, Pong sub-class
LOC_Os06g21498	NA	NA	6	+	12417884..12419227	transposon protein, putative, Pong sub-class
LOC_Os06g21507	NA	NA	6	+	12420569..12421912	transposon protein, putative, Pong sub-class
LOC_Os06g21516	NA	NA	6	+	12422324..12424494	transposon protein, putative, Pong sub-class
LOC_Os06g21530	Os.2106.1.S2_at	2/11	6	+	12425185..12425832	expressed protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.15536.1.S1_x_at--607--811	54	Chr11:14227053..14227172 (25 bp)	GGACGTTGTCGGTGTGTACTATGCC	NONE
OsAffx.15536.1.S1_x_at--420--951	13	Chr11:8110759..8111150 (25 bp)	TCTCGACCTGTCCATTGCTTTGAGG	NONE
OsAffx.15536.1.S1_x_at--581--379	15	Chr11:8110760..8111151 (25 bp)	CTCGACCTGTCCATTGCTTTGAGGG	NONE
OsAffx.15536.1.S1_x_at--417--643	3	Chr12:12812212..12812236 (25 bp)	GATCTTGACTCCCAATCCGATACAG	NONE
OsAffx.15536.1.S1_x_at--833--957	3	Chr12:12812214..12812238 (25 bp)	TCTTGACTCCCAATCCGATACAGTA	NONE
OsAffx.15536.1.S1_x_at--943--1075	3	Chr12:12812216..12812240 (25 bp)	TTGACTCCCAATCCGATACAGTAAT	NONE
OsAffx.15536.1.S1_x_at--135--373	3	Chr12:12812220..12812244 (25 bp)	CTCCCAATCCGATACAGTAATCCTG	NONE
OsAffx.15536.1.S1_x_at--140--451	1	Chr06:12399515..12399539 (25 bp)	GCCGTTGTCCGTTATAATGCGGTGA	LOC_Os06g21460
OsAffx.15536.1.S1_x_at--905--775	26	Chr12:4371674..4371698 (25 bp)	GGTGAGGCAATCCATATCTGCAGAA	NONE
OsAffx.15536.1.S1_x_at--224--1025	16	Chr11:24242344..24242377 (25 bp)	TTTGATAGCGTTGTCGGCCTTGATT	NONE
OsAffx.15536.1.S1_x_at--1028--17	1	Chr06:12399433..12399457 (25 bp)	ATTTCCCCCGTGAGTGTCGCTTCGA	LOC_Os06g21460

Target Sequence

GGACGTTGTCGGTGTGTACTATGCCGTTTGCCCTCTCGACCTGTCCATTGCTTTGAGGGTGAGAAACCGAGGCGAAGCAG
ATCTTGACTCCCAATCCGATACAGTAATCCTGGAAGTCGGCACTGATGAACTGGGAGCCGTTGTCCGTTATAATGCGGTG
AGGCAATCCATATCTGCAGAATATCCCTTTAATGAATTTGATAGCGTTGTCGGCCTTGATTTCCCCCGTGAGTGTCGCTT
CGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis