Browse Element(s) Details

OsAffx.15692.1.S1_at

Description

tigr:9634.m03019
TID=OsAffx.15692.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g32290	11/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g32240	Os.8655.1.S1_at	11/11	6	+	18772307..18773445	Plant thionin family protein, expressed
LOC_Os06g32250	NA	NA	6	+	18778321..18778716	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g32260	NA	NA	6	+	18781913..18785245	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32270	Os.46053.2.S1_x_at	10/11	6	+	18786482..18789700	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32280	Os.14491.2.S1_x_at	5/11	6	+	18791768..18795468	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32280	Os.47463.1.S1_x_at	5/11	6	+	18791768..18795468	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g32290	OsAffx.15692.1.S1_x_at	11/11	6	+	18795911..18796986	hypothetical protein
LOC_Os06g32290	OsAffx.15692.1.S1_at	11/11	6	+	18795911..18796986	hypothetical protein
LOC_Os06g32300	OsAffx.15693.1.S1_at	11/11	6	+	18799085..18799896	hypothetical protein
LOC_Os06g32300	Os.26810.1.A1_s_at	1/11	6	+	18799085..18799896	hypothetical protein
LOC_Os06g32310	OsAffx.26087.1.S1_x_at	11/11	6	+	18805665..18806481	hypothetical protein
LOC_Os06g32310	OsAffx.26087.1.S1_at	11/11	6	+	18805665..18806481	hypothetical protein
LOC_Os06g32320	OsAffx.15694.1.S1_at	10/11	6	+	18809317..18811262	hypothetical protein
LOC_Os06g32330	OsAffx.15695.1.S1_x_at	4/11	6	+	18816252..18816728	hypothetical protein
LOC_Os06g32330	OsAffx.4378.1.S1_at	2/11	6	+	18816252..18816728	hypothetical protein
LOC_Os06g32330	OsAffx.4378.1.S1_x_at	1/11	6	+	18816252..18816728	hypothetical protein
LOC_Os06g32340	NA	NA	6	+	18821333..18826727	transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.15692.1.S1_at--101--869	1	Chr06:18796161..18796183 (23 bp)	TGTGCAGCACCATGAACACTTGTGC	LOC_Os06g32290
OsAffx.15692.1.S1_at--494--337	1	Chr06:18796037..18796176 (25 bp)	CACCATGAACACTTGTGCTGGCAAT	LOC_Os06g32290
OsAffx.15692.1.S1_at--737--433	1	Chr06:18796035..18796174 (25 bp)	CCATGAACACTTGTGCTGGCAATGA	LOC_Os06g32290
OsAffx.15692.1.S1_at--733--897	1	Chr06:18796032..18796171 (25 bp)	TGAACACTTGTGCTGGCAATGAAGA	LOC_Os06g32290
OsAffx.15692.1.S1_at--917--535	1	Chr06:18796012..18796036 (25 bp)	GAAGAAGGGAATCATGTCGTCGATC	LOC_Os06g32290
OsAffx.15692.1.S1_at--1141--273	1	Chr06:18796011..18796035 (25 bp)	AAGAAGGGAATCATGTCGTCGATCG	LOC_Os06g32290
OsAffx.15692.1.S1_at--1008--639	1	Chr06:18795991..18796015 (25 bp)	GATCGTTGCAACGATGCATCACTGG	LOC_Os06g32290
OsAffx.15692.1.S1_at--507--939	1	Chr06:18795989..18796013 (25 bp)	TCGTTGCAACGATGCATCACTGGTG	LOC_Os06g32290
OsAffx.15692.1.S1_at--1162--665	1	Chr06:18795987..18796011 (25 bp)	GTTGCAACGATGCATCACTGGTGGA	LOC_Os06g32290
OsAffx.15692.1.S1_at--934--901	1	Chr06:18795985..18796009 (25 bp)	TGCAACGATGCATCACTGGTGGAGA	LOC_Os06g32290
OsAffx.15692.1.S1_at--1060--515	4	Chr06:18795984..18796008 (25 bp)	GCAACGATGCATCACTGGTGGAGAA	LOC_Os06g32290

Target Sequence

TGTGCAGCACCATGAACACTTGTGCTGGCAATGAAGAAGGGAATCATGTCGTCGATCGTTGCAACGATGCATCACTGGTG
GAGAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis