Browse Element(s) Details


OsAffx.15775.1.S1_at

Description tigr:9634.m03453
TID=OsAffx.15775.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3636011/11Poly polymerase central domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g36340OsAffx.27961.1.S1_at11/116+21325481..21329847hypothetical protein
LOC_Os06g36340OsAffx.27960.1.S1_at11/116+21325481..21329847hypothetical protein
LOC_Os06g36349NANA6+21340454..21341106NA
LOC_Os06g36360Os.14584.1.S1_at11/116+21342404..21349084Poly polymerase central domain containing protein, expressed
LOC_Os06g36360OsAffx.15775.1.S1_at11/116+21342404..21349084Poly polymerase central domain containing protein, expressed
LOC_Os06g36360Os.14584.1.S1_s_at11/116+21342404..21349084Poly polymerase central domain containing protein, expressed
LOC_Os06g36360Os.16439.1.S1_at2/116+21342404..21349084Poly polymerase central domain containing protein, expressed
LOC_Os06g36370NANA6+21351883..21352242hypothetical protein
LOC_Os06g36380Os.29923.1.S1_at11/116+21361860..21362651expressed protein
LOC_Os06g36390Os.38309.1.S1_at11/116+21371366..21373329expressed protein
LOC_Os06g36400OsAffx.15777.1.S1_at1/116+21372861..21376315HAD superfamily phosphatase containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016779molecular_functionnucleotidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15775.1.S1_at--172--3191Chr06:21342987..21343011 (25 bp)
CAATTTGCTCTGTTTTCTTTATACC
LOC_Os06g36360
OsAffx.15775.1.S1_at--63--10291Chr06:21342984..21343008 (25 bp)
TTTGCTCTGTTTTCTTTATACCCTG
LOC_Os06g36360
OsAffx.15775.1.S1_at--231--9471Chr06:21342979..21343003 (25 bp)
TCTGTTTTCTTTATACCCTGCTGTT
LOC_Os06g36360
OsAffx.15775.1.S1_at--963--6791Chr06:21342976..21343000 (25 bp)
GTTTTCTTTATACCCTGCTGTTTGG
LOC_Os06g36360
OsAffx.15775.1.S1_at--450--10171Chr06:21342968..21342992 (25 bp)
TATACCCTGCTGTTTGGTACTTGTT
LOC_Os06g36360
OsAffx.15775.1.S1_at--1150--4271Chr06:21342963..21342987 (25 bp)
CCTGCTGTTTGGTACTTGTTTGTTA
LOC_Os06g36360
OsAffx.15775.1.S1_at--1058--7831Chr06:21342953..21342977 (25 bp)
GGTACTTGTTTGTTACTCTATCTCA
LOC_Os06g36360
OsAffx.15775.1.S1_at--149--2071Chr06:21342950..21342974 (25 bp)
ACTTGTTTGTTACTCTATCTCAGGG
LOC_Os06g36360
OsAffx.15775.1.S1_at--621--8771Chr06:21342947..21342971 (25 bp)
TGTTTGTTACTCTATCTCAGGGTTA
LOC_Os06g36360
OsAffx.15775.1.S1_at--436--8791Chr06:21342943..21342967 (25 bp)
TGTTACTCTATCTCAGGGTTAGTCT
LOC_Os06g36360
OsAffx.15775.1.S1_at--210--9911Chr06:21342940..21342964 (25 bp)
TACTCTATCTCAGGGTTAGTCTGAC
LOC_Os06g36360
Target Sequence 
CAATTTGCTCTGTTTTCTTTATACCCTGCTGTTTGGTACTTGTTTGTTACTCTATCTCAGGGTTAGTCTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15775.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis