Browse Element(s) Details


OsAffx.15798.1.S1_at

Description tigr:9634.m03578
TID=OsAffx.15798.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc knuckle, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3752011/11Zinc knuckle family protein
LOC_Os05g520198/11retrotransposon protein, putative, unclassified
LOC_Os05g520378/11retrotransposon protein, putative, unclassified
LOC_Os12g359608/11retrotransposon protein, putative, unclassified
LOC_Os04g258106/11retrotransposon protein, putative, unclassified
LOC_Os05g080504/11retrotransposon protein, putative, unclassified
LOC_Os08g239901/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g37500OsAffx.15797.1.S1_at11/116+22191036..22193966Cytokinin dehydrogenase 1 precursor, putative
LOC_Os06g37510Os.47945.1.A1_at11/116+22196412..22199011senescence-associated protein, putative, expressed
LOC_Os06g37520OsAffx.15798.1.S1_at11/116+22208187..22208927Zinc knuckle family protein
LOC_Os06g37530OsAffx.15799.1.S1_at11/116+22214824..22216864hypothetical protein
LOC_Os06g37530Os.29966.2.S1_x_at1/116+22214824..22216864hypothetical protein
LOC_Os06g37530Os.29966.1.S1_x_at1/116+22214824..22216864hypothetical protein
LOC_Os06g37530Os.29966.1.S1_at1/116+22214824..22216864hypothetical protein
LOC_Os06g37540OsAffx.27977.1.S1_at11/116+22222464..22222768hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15798.1.S1_at--195--10556Chr06:22208369..22208393 (25 bp)
TTCTTCGAATGAAAGGTGCCACCTG
LOC_Os06g37520
OsAffx.15798.1.S1_at--694--9176Chr06:22208385..22208409 (25 bp)
TGCCACCTGACTCCAGCAAAACGAA
LOC_Os06g37520
OsAffx.15798.1.S1_at--906--5676Chr06:22208446..22208470 (25 bp)
GACATTGTGCCTTGGATTGCCCTAA
LOC_Os06g37520
OsAffx.15798.1.S1_at--462--8234Chr06:22208531..22208555 (25 bp)
GGCAGGAATACCACCAAAACCGATG
LOC_Os06g37520
OsAffx.15798.1.S1_at--507--2434Chr06:22208546..22208570 (25 bp)
AAAACCGATGCCACATTCACTCTAT
LOC_Os06g37520
OsAffx.15798.1.S1_at--51--3314Chr06:22208557..22208581 (25 bp)
CACATTCACTCTATCCAAAACCTAT
LOC_Os06g37520
OsAffx.15798.1.S1_at--710--2356Chr06:22208574..22208598 (25 bp)
AAACCTATGTATCAGCAATTTCGTA
LOC_Os06g37520
OsAffx.15798.1.S1_at--855--1416Chr08:14381997..14382016 (20 bp)
AGACAAGGAACTACACCACATTGGT
LOC_Os08g23990
OsAffx.15798.1.S1_at--636--2216Chr06:22208825..22208849 (25 bp)
ACAAGAAACACTGCCTTCACAGATC
LOC_Os06g37520
OsAffx.15798.1.S1_at--541--392Chr06:22208847..22208871 (25 bp)
ATCAGCCCGGAAGAGCATAGAGTTT
LOC_Os06g37520
OsAffx.15798.1.S1_at--611--291Chr06:22208863..22208887 (25 bp)
ATAGAGTTTTAGACCCATCCAAAGA
LOC_Os06g37520
Target Sequence 
TTCTTCGAATGAAAGGTGCCACCTGACTCCAGCAAAACGAAGGATAAATGCCACGTGTTATAGATGTGGCGAGGAAGGAC
ATTGTGCCTTGGATTGCCCTAAGAAAAAGCTAGGAAATGGACAAGTAAGGAATATACCCCGACACCCAAAAAGGAAAATG
AGGGCAGGAATACCACCAAAACCGATGCCACATTCACTCTATCCAAAACCTATGTATCAGCAATTTCGTAGACAAGGAAC
TACACCACATTGGTGGAAAGGAAAACGGGAAAGAAAAGCGTCATCACTAATAACATATGCTGAACTTGATATCAGTAAAA
TGGGAATAGAAATCGGTGATTTGCCTGAAGAAGTTGAAGAGCTACAACTATGGCAACGAAAGAGAGATGGATGTTGTTTT
TCTTGTGGACAATTTGGACATTATGCGATAGGCTGTACTCAAGACACCAATGAAGAACAAGAAACACTGCCTTCACAGAT
CAGCCCGGAAGAGCATAGAGTTTTAGACCCATCCAAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15798.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis