Browse Element(s) Details


OsAffx.15802.1.S1_at

Description tigr:9634.m03590
TID=OsAffx.15802.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3764011/11expressed protein
LOC_Os06g376301/11transposon protein, putative, Mariner sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g37610Os.6027.1.A1_at11/116+22265803..22270123Cyclopropane-fatty-acyl-phospholipid synthase family protein, expressed
LOC_Os06g37620OsAffx.27980.1.S1_at11/116+22270192..22274419U-box domain containing protein, expressed
LOC_Os06g37630OsAffx.15802.1.S1_at1/116+22279908..22285497transposon protein, putative, Mariner sub-class
LOC_Os06g37640OsAffx.15802.1.S1_at11/116+22291249..22300033expressed protein
LOC_Os06g37650OsAffx.15803.1.S1_at11/116+22304094..22305544hypothetical protein
LOC_Os06g37660Os.38745.1.S1_at11/116+22306184..22312291Serine/threonine protein phosphatase PP2A-1 catalytic subunit, putative, expressed
LOC_Os06g37660Os.38745.2.S1_at9/116+22306184..22312291Serine/threonine protein phosphatase PP2A-1 catalytic subunit, putative, expressed
LOC_Os06g37670NANA6+22314610..22317084D-mannose binding lectin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15802.1.S1_at--332--9851Chr06:22291912..22291936 (25 bp)
TAAATCATGGACTTCTGGTGCCCTT
LOC_Os06g37640
OsAffx.15802.1.S1_at--493--3391Chr06:22291875..22291899 (25 bp)
CAGCGGGATGCAATGTCTTTCACAG
LOC_Os06g37640
OsAffx.15802.1.S1_at--228--10631Chr06:22291827..22291851 (25 bp)
TTCGTCTTCCAGTGCAGCGGTTCTG
LOC_Os06g37640
OsAffx.15802.1.S1_at--110--8572Chr06:22291784..22291808 (25 bp)
TGGTTAAATCGCTTATCCGGTGCTA
LOC_Os06g37640
OsAffx.15802.1.S1_at--594--10131Chr06:22291771..22291795 (25 bp)
TATCCGGTGCTATGGCCAGAAGCGC
LOC_Os06g37640
OsAffx.15802.1.S1_at--899--4411Chr06:22291761..22291781 (21 bp)
GCCAGAAGCGCCATCACGAGGATAT
LOC_Os06g37640
OsAffx.15802.1.S1_at--926--252Chr05:1123635..1123774 (25 bp)
ATATGCTCAAGGGTTTTGTTCTACA
NONE
OsAffx.15802.1.S1_at--1132--10251Chr06:22291635..22291659 (25 bp)
TTTGTTCTACAAGGCATTGCGCAAG
LOC_Os06g37640
OsAffx.15802.1.S1_at--133--6331Chr06:22291552..22291576 (25 bp)
GATGAATTCTTCTCTTTTAGCTGAG
LOC_Os06g37640
OsAffx.15802.1.S1_at--70--3571Chr06:22291349..22291373 (25 bp)
CATCAGTGTGTGTAGGAGTGCTCCC
LOC_Os06g37640
OsAffx.15802.1.S1_at--781--4191Chr06:22291327..22291351 (25 bp)
CCCGGTTGTGGCTTGTGGGTTACAT
LOC_Os06g37640
Target Sequence 
TAAATCATGGACTTCTGGTGCCCTTGACAAAGCTTTTCAGCGGGATGCAATGTCTTTCACAGTAGCAAGGCATCACCTTT
CTGGCTTCGTCTTCCAGTGCAGCGGTTCTGGCAAAGTGCGGAATAAGCTGGTTAAATCGCTTATCCGGTGCTATGGCCAG
AAGCGCCATCACGAGGATATGCTCAAGGGTTTTGTTCTACAAGGCATTGCGCAAGATTCACAACGTAATGATGAAGTTAG
CCGACGATTTGAAATCATGAAGGATGCTTGTGAGATGAATTCTTCTCTTTTAGCTGAGGTTCGGAGACTGAAGACATCAA
TTGATAGATAAATGGCCCCAAAAGCATTTCACATGCACTCAGAGAAGGAGCAATTTTTTTGGTGATTGTAAATAGTAACA
TGTGTCAATGACAAATGGCTAGAGAATAGTTGCATTGTTCGAGTTTACTTTGCATTACAAACCAACCAAAGGAAAACATC
AGTGTGTGTAGGAGTGCTCCCGGTTGTGGCTTGTGGGTTACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15802.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis