CREP Browser

Description

tigr:9634.m03655
TID=OsAffx.15818.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g38350	11/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g38320	Os.19296.2.S1_at	11/11	6	+	22698046..22704079	expressed protein
LOC_Os06g38320	Os.19296.1.S1_at	10/11	6	+	22698046..22704079	expressed protein
LOC_Os06g38330	OsAffx.27987.1.S1_at	11/11	6	+	22708740..22709114	hypothetical protein
LOC_Os06g38340	Os.53763.1.A1_at	11/11	6	+	22709848..22713669	Leucine Rich Repeat family protein, expressed
LOC_Os06g38350	OsAffx.15818.1.S1_at	11/11	6	+	22726469..22726801	hypothetical protein
LOC_Os06g38360	Os.35344.18.S1_x_at	7/11	6	+	22730001..22732970	hypothetical protein
LOC_Os06g38360	Os.35344.3.S1_x_at	7/11	6	+	22730001..22732970	hypothetical protein
LOC_Os06g38360	OsAffx.22940.5.S1_x_at	2/11	6	+	22730001..22732970	hypothetical protein
LOC_Os06g38370	NA	NA	6	+	22735505..22735855	expressed protein
LOC_Os06g38380	NA	NA	6	+	22741847..22742218	hypothetical protein
LOC_Os06g38390	NA	NA	6	+	22743905..22744279	hypothetical protein
LOC_Os06g38400	NA	NA	6	+	22745470..22751074	retrotransposon protein, putative, Ty1-copia subclass

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.15818.1.S1_at--384--391	1	Chr06:22726520..22726544 (25 bp)	CTGGCTCTCCTGATAGGCAGCGGCG	LOC_Os06g38350
OsAffx.15818.1.S1_at--456--59	1	Chr06:22726550..22726574 (25 bp)	ATGCCCTCGGCTCAGCAAGGCAGCG	LOC_Os06g38350
OsAffx.15818.1.S1_at--502--945	1	Chr06:22726556..22726580 (25 bp)	TCGGCTCAGCAAGGCAGCGCACGAG	LOC_Os06g38350
OsAffx.15818.1.S1_at--245--149	1	Chr06:22726563..22726583 (21 bp)	AGCAAGGCAGCGCACGAGTCCATAA	LOC_Os06g38350
OsAffx.15818.1.S1_at--743--293	1	Chr06:22726566..22726728 (25 bp)	AAGGCAGCGCACGAGTCCATAATCC	LOC_Os06g38350
OsAffx.15818.1.S1_at--320--165	1	Chr06:22726571..22726733 (25 bp)	AGCGCACGAGTCCATAATCCGCATG	LOC_Os06g38350
OsAffx.15818.1.S1_at--318--187	1	Chr06:22726576..22726738 (25 bp)	ACGAGTCCATAATCCGCATGGTCCA	LOC_Os06g38350
OsAffx.15818.1.S1_at--952--81	1	Chr06:22726731..22726755 (25 bp)	ATGGTCCACCGCAGACCCATGGTAC	LOC_Os06g38350
OsAffx.15818.1.S1_at--1100--177	1	Chr06:22726738..22726762 (25 bp)	ACCGCAGACCCATGGTACTGGTTTT	LOC_Os06g38350
OsAffx.15818.1.S1_at--226--139	1	Chr06:22726743..22726767 (25 bp)	AGACCCATGGTACTGGTTTTAGCTA	LOC_Os06g38350
OsAffx.15818.1.S1_at--978--433	1	Chr06:22726747..22726771 (25 bp)	CCATGGTACTGGTTTTAGCTACGAC	LOC_Os06g38350

Target Sequence

CTGGCTCTCCTGATAGGCAGCGGCGTCCCCATGCCCTCGGCTCAGCAAGGCAGCGCACGAGTCCATAATCCGCATGGTCC
ACCGCAGACCCATGGTACTGGTTTTAGCTACGAC

Expression Profiles

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Browse Element(s) Details