Browse Element(s) Details


OsAffx.15821.2.S1_at

Description tigr:9634.m03668
TID=OsAffx.15821.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3846011/11hypothetical protein
LOC_Os07g160904/11hypothetical protein
LOC_Os08g279804/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g326301/11hypothetical protein
LOC_Os08g304101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38430Os.51681.1.S1_x_at11/116+22765884..22766567expressed protein
LOC_Os06g38430Os.51681.1.S1_at11/116+22765884..22766567expressed protein
LOC_Os06g38430Os.51797.1.S1_x_at1/116+22765884..22766567expressed protein
LOC_Os06g38440OsAffx.5045.1.S1_at11/116+22776169..22777114hypothetical protein
LOC_Os06g38450Os.35456.1.S1_at11/116+22778412..22780112Papain family cysteine protease containing protein, expressed
LOC_Os06g38460OsAffx.15821.2.S1_at11/116+22790491..22790871hypothetical protein
LOC_Os06g38470Os.10708.2.S1_at11/116+22793362..22799199histone deacetylase, putative, expressed
LOC_Os06g38470Os.10708.1.S1_a_at11/116+22793362..22799199histone deacetylase, putative, expressed
LOC_Os06g38470Os.10708.1.S1_at11/116+22793362..22799199histone deacetylase, putative, expressed
LOC_Os06g38470Os.28463.1.S1_x_at1/116+22793362..22799199histone deacetylase, putative, expressed
LOC_Os06g38480Os.54381.1.S1_at11/116+22806541..22808931retrotransposon protein, putative, unclassified, expressed
LOC_Os06g38490OsAffx.15822.1.S1_at11/116+22808654..22812272Leucine Rich Repeat family protein
LOC_Os06g38490Os.54901.1.S1_at1/116+22808654..22812272Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009861biological_processjasmonic acid and ethylene-dependent systemic resistance
GO:0016575biological_processhistone deacetylation
GO:0005634cellular_componentnucleus
GO:0004407molecular_functionhistone deacetylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15821.2.S1_at--606--42320Chr12:27198219..27198243 (25 bp)
CCGATCTAATCGGATGCATAGGAGA
NONE
OsAffx.15821.2.S1_at--201--6518Chr12:27198232..27198256 (25 bp)
ATGCATAGGAGACGGCTGCAGCCAC
NONE
OsAffx.15821.2.S1_at--274--92723Chr12:27198275..27198299 (25 bp)
TCCTGCGTCGTGCTGATGGACACCA
NONE
OsAffx.15821.2.S1_at--969--71922Chr12:27198281..27198305 (25 bp)
GTCGTGCTGATGGACACCAACGCCG
NONE
OsAffx.15821.2.S1_at--1024--7251Chr06:22790658..22790682 (25 bp)
GTCCTCCCGGAGTTGTGGATCTGTT
LOC_Os06g38460
OsAffx.15821.2.S1_at--811--8031Chr06:22790650..22790674 (25 bp)
GGAGTTGTGGATCTGTTCCCTCTGC
LOC_Os06g38460
OsAffx.15821.2.S1_at--889--2491Chr06:22790619..22790643 (25 bp)
AACGTCGACGAGGATTGCCCGATTT
LOC_Os06g38460
OsAffx.15821.2.S1_at--1014--51Chr06:22790606..22790630 (25 bp)
ATTGCCCGATTTTCCATGGCTTCTA
LOC_Os06g38460
OsAffx.15821.2.S1_at--753--10571Chr06:22790586..22790610 (25 bp)
TTCTACATCTACTGCCAGACCTGCG
LOC_Os06g38460
OsAffx.15821.2.S1_at--793--4552Chr07:21564407..21564431 (25 bp)
GCGCCATCATCGATCGCTACCATGG
NONE
OsAffx.15821.2.S1_at--742--4852Chr07:21564422..21564446 (25 bp)
GCTACCATGGCGCACAAAACGTCGT
NONE
Target Sequence 
CCGATCTAATCGGATGCATAGGAGACGGCTGCAGCCACGCCGATGTCTTCCTGCCGTCCTGCGTCGTGCTGATGGACACC
AACGCCGCCCGCGACTGCGACCTCCGCCTCCTCCGCTCCGACGACTACGTCGCCTCCCTCCCCGCCGTCCTCCCGGAGTT
GTGGATCTGTTCCCTCTGCCGCTTCAACGTCGACGAGGATTGCCCGATTTTCCATGGCTTCTACATCTACTGCCAGACCT
GCGCAGGGGACTGTGCCCGCGCCATCATCGATCGCTACCATGGCGCACAAAACGTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15821.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis