Browse Element(s) Details


OsAffx.1586.1.A1_at

Description gb:NM_185357.1
DB_XREF= gi:34897799
TID=OsAffx.1586.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0514G12.20 (P0514G12.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g206708/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20610NANA9+12420501..12422187retrotransposon protein, putative, unclassified
LOC_Os09g20620NANA9+12423144..12424987retrotransposon protein, putative, LINE subclass
LOC_Os09g20630Os.52436.1.S1_at11/119+12427220..12429822ASC1-like protein 1, putative, expressed
LOC_Os09g20640Os.49852.1.S1_at11/119+12430006..12433573Protein kinase domain containing protein, expressed
LOC_Os09g20650Os.10885.1.S1_at11/119+12435990..12438215F-box protein interaction domain containing protein, expressed
LOC_Os09g20660Os.23191.1.S1_at11/119+12442364..12444865Brain protein 44, putative, expressed
LOC_Os09g20670OsAffx.1586.2.A1_s_at11/119+12446164..12447018hypothetical protein
LOC_Os09g20670OsAffx.1586.1.A1_x_at9/119+12446164..12447018hypothetical protein
LOC_Os09g20670OsAffx.1586.1.A1_at8/119+12446164..12447018hypothetical protein
LOC_Os09g20670OsAffx.1586.2.A1_at6/119+12446164..12447018hypothetical protein
LOC_Os09g20684Os.56245.1.S1_at11/119+12453424..12459995Strictosidine synthase family protein, expressed
LOC_Os09g20700NANA9+12465522..12466997Strictosidine synthase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1586.1.A1_at--499--3793Chr09:12446103..12446127 (25 bp)
CTCGAGGGCATCACGCTAGGCAACG
NONE
OsAffx.1586.1.A1_at--473--1493Chr09:12446145..12446169 (25 bp)
AGCAAGCTACGTGGCGGCGATGACC
NONE
OsAffx.1586.1.A1_at--691--1573Chr09:12446149..12446173 (25 bp)
AGCTACGTGGCGGCGATGACCCGTC
NONE
OsAffx.1586.1.A1_at--829--8333Chr09:12446296..12446320 (25 bp)
GGCCGTGGCAGTCCGAGGGTTGGCG
LOC_Os09g20670
OsAffx.1586.1.A1_at--971--1534Chr09:12446602..12446626 (25 bp)
AGCTTCCATGGCAGGTTCTTGTCGC
LOC_Os09g20670
OsAffx.1586.1.A1_at--876--4914Chr09:12446603..12446627 (25 bp)
GCTTCCATGGCAGGTTCTTGTCGCG
LOC_Os09g20670
OsAffx.1586.1.A1_at--206--10694Chr09:12446605..12446629 (25 bp)
TTCCATGGCAGGTTCTTGTCGCGTC
LOC_Os09g20670
OsAffx.1586.1.A1_at--710--9234Chr09:12446606..12446630 (25 bp)
TCCATGGCAGGTTCTTGTCGCGTCC
LOC_Os09g20670
OsAffx.1586.1.A1_at--167--3494Chr09:12446608..12446632 (25 bp)
CATGGCAGGTTCTTGTCGCGTCCGG
LOC_Os09g20670
OsAffx.1586.1.A1_at--404--854Chr09:12446609..12446633 (25 bp)
ATGGCAGGTTCTTGTCGCGTCCGGT
LOC_Os09g20670
OsAffx.1586.1.A1_at--970--5014Chr09:12446612..12446636 (25 bp)
GCAGGTTCTTGTCGCGTCCGGTGCG
LOC_Os09g20670
Target Sequence 
CTCGAGGGCATCACGCTAGGCAACGCCCTGGAGAAGGAGAAGAGCAAGCTACGTGGCGGCGATGACCCGTCGCGCTGGTC
CGACGAGAAGAGCGGCAGCGGCAGGGAGTGGTCAAGCCTGGGATGGCACGGCGATCCTCGGCACGAGCAAGCGGTACTGC
GCATATGCGAGGAAGGCTCGTTTGGCGACGGACGGCCGTGGCAGTCCGAGGGTTGGCGGGGAGAGGAGGGGCGGCAAGCC
GGCGGCGGGTTCGGCCTGGTCAACGGCGAATCGGCGATGGCGGGGCGGCTGGGTCCAACGATGAGCTCCGTGAGGGAGGA
GGCGAGCTCCTTGTGCTCCGACGGAGGAGGGGCTCCCACTCCGTCCCCTCGTACTCGGGTTCCGGCGACGAGAACGGTGG
TGGTGGTGACGAGAACGCCGCGAGCTTCCATGGCAGGTTCTTGTCGCGTCCGGTGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1586.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis