Browse Element(s) Details


OsAffx.1586.2.A1_s_at

Description tigr:9637.m01768
TID=OsAffx.1586.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2067011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g20610NANA9+12420501..12422187retrotransposon protein, putative, unclassified
LOC_Os09g20620NANA9+12423144..12424987retrotransposon protein, putative, LINE subclass
LOC_Os09g20630Os.52436.1.S1_at11/119+12427220..12429822ASC1-like protein 1, putative, expressed
LOC_Os09g20640Os.49852.1.S1_at11/119+12430006..12433573Protein kinase domain containing protein, expressed
LOC_Os09g20650Os.10885.1.S1_at11/119+12435990..12438215F-box protein interaction domain containing protein, expressed
LOC_Os09g20660Os.23191.1.S1_at11/119+12442364..12444865Brain protein 44, putative, expressed
LOC_Os09g20670OsAffx.1586.2.A1_s_at11/119+12446164..12447018hypothetical protein
LOC_Os09g20670OsAffx.1586.1.A1_x_at9/119+12446164..12447018hypothetical protein
LOC_Os09g20670OsAffx.1586.1.A1_at8/119+12446164..12447018hypothetical protein
LOC_Os09g20670OsAffx.1586.2.A1_at6/119+12446164..12447018hypothetical protein
LOC_Os09g20684Os.56245.1.S1_at11/119+12453424..12459995Strictosidine synthase family protein, expressed
LOC_Os09g20700NANA9+12465522..12466997Strictosidine synthase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1586.2.A1_s_at--909--9713Chr09:12446214..12446238 (25 bp)
TCAAGCCTGGGATGGCACGGCGATC
LOC_Os09g20670
OsAffx.1586.2.A1_s_at--578--7893Chr09:12446427..12446451 (25 bp)
GGTTCGGCCTGGTCAACGGCGAATC
LOC_Os09g20670
OsAffx.1586.2.A1_s_at--418--9453Chr09:12446430..12446454 (25 bp)
TCGGCCTGGTCAACGGCGAATCGGC
LOC_Os09g20670
OsAffx.1586.2.A1_s_at--671--4693Chr09:12446464..12446488 (25 bp)
GCGGCTGGGTCCAACGATGAGCTCC
LOC_Os09g20670
OsAffx.1586.2.A1_s_at--30--4733Chr09:12446467..12446491 (25 bp)
GCTGGGTCCAACGATGAGCTCCGTG
LOC_Os09g20670
OsAffx.1586.2.A1_s_at--741--8633Chr09:12446469..12446493 (25 bp)
TGGGTCCAACGATGAGCTCCGTGAG
LOC_Os09g20670
OsAffx.1586.2.A1_s_at--366--7273Chr09:12446472..12446496 (25 bp)
GTCCAACGATGAGCTCCGTGAGGGA
LOC_Os09g20670
OsAffx.1586.2.A1_s_at--768--8374Chr09:12446500..12446524 (25 bp)
GGCGAGCTCCTTGTGCTCCGACGGA
LOC_Os09g20670
OsAffx.1586.2.A1_s_at--874--1573Chr09:12446504..12446528 (25 bp)
AGCTCCTTGTGCTCCGACGGAGGAG
LOC_Os09g20670
OsAffx.1586.2.A1_s_at--613--9393Chr09:12446548..12446572 (25 bp)
TCGTACTCGGGTTCCGGCGACGAGA
LOC_Os09g20670
OsAffx.1586.2.A1_s_at--841--7493Chr09:12446582..12446606 (25 bp)
GTGGTGACGAGAACGCCGCGAGCTT
LOC_Os09g20670
Target Sequence 
TCAAGCCTGGGATGGCACGGCGATCCTCGGCACGAGCAAGCGGGACTGCGCATATGCGAGGAAGGATCGTTTGGCGACGG
CCGGCCGTGGCATTCCAAGGGTTGCCCGGGAGAGAAGGGGCGGCCAACCGGCGGCGGGGTCGGCTGGTTCAAGGGCGCTT
CCTCCCCATGCGCTGCCTCTGCTCGTCCTCCGTCTTCAGCACGTCGCGCGGCGGGTTCGGCCTGGTCAACGGCGAATCGG
CGATGGCGGGGCGGCTGGGTCCAACGATGAGCTCCGTGAGGGAGGAGGCGAGCTCCTTGTGCTCCGACGGAGGAGGGGCT
CCCACTCCGTCCCTTCGTACTCGGGTTCCGGCGACGAGAACGGTGGTGGTGGTGACGAGAACGCCGCGAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1586.2.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis