Browse Element(s) Details


OsAffx.15860.1.S1_at

Description tigr:9634.m03883
TID=OsAffx.15860.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4046011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40430OsAffx.28024.1.S1_at11/116+24081801..24084159hypothetical protein
LOC_Os06g40430OsAffx.5068.1.S1_at11/116+24081801..24084159hypothetical protein
LOC_Os06g40440Os.11307.1.S1_at11/116+24088906..24090220expressed protein
LOC_Os06g40440OsAffx.4053.1.S1_at1/116+24088906..24090220expressed protein
LOC_Os06g40450Os.49516.1.S1_at11/116+24090285..24095113Targeting protein for Xklp2 containing protein, expressed
LOC_Os06g40450Os.6737.1.S1_at11/116+24090285..24095113Targeting protein for Xklp2 containing protein, expressed
LOC_Os06g40450Os.6737.1.S1_s_at11/116+24090285..24095113Targeting protein for Xklp2 containing protein, expressed
LOC_Os06g40460Os.52578.1.S1_x_at11/116+24101989..24107136expressed protein
LOC_Os06g40460OsAffx.15860.1.S1_at11/116+24101989..24107136expressed protein
LOC_Os06g40470NANA6+24109519..24112810retrotransposon protein, putative, unclassified
LOC_Os06g40480NANA6+24113441..24119596retrotransposon protein, putative, unclassified
LOC_Os06g40490Os.50415.1.S1_at11/116+24126170..24129371Glycosyl hydrolases family 17 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15860.1.S1_at--812--10011Chr06:24106059..24106083 (25 bp)
TAGAGCTAAGGTGGACTTCAGCAAA
LOC_Os06g40460
OsAffx.15860.1.S1_at--42--1371Chr06:24106083..24106107 (25 bp)
AGAGAACTACTTCCTCTGTTGTCAC
LOC_Os06g40460
OsAffx.15860.1.S1_at--921--6631Chr06:24106100..24106124 (25 bp)
GTTGTCACCAACATCCAGCATAATG
LOC_Os06g40460
OsAffx.15860.1.S1_at--1037--2971Chr06:24106121..24106145 (25 bp)
AATGGGCCTGCTACTGATAGTCATA
LOC_Os06g40460
OsAffx.15860.1.S1_at--1053--10051Chr06:24106138..24106162 (25 bp)
TAGTCATAGACATAGCAGCATCAAC
LOC_Os06g40460
OsAffx.15860.1.S1_at--631--3551Chr06:24106156..24106180 (25 bp)
CATCAACGATAGTGGTAGTGCTCAA
LOC_Os06g40460
OsAffx.15860.1.S1_at--634--6911Chr06:24106170..24106194 (25 bp)
GTAGTGCTCAACAGGAAATTTCAGA
LOC_Os06g40460
OsAffx.15860.1.S1_at--314--5071Chr06:24106546..24106570 (25 bp)
GCAGCTCCAATGCTGTGGAATCTAG
LOC_Os06g40460
OsAffx.15860.1.S1_at--730--1091Chr06:24106587..24106611 (25 bp)
AGTGGGACCAAGTCAATGCCCTCTT
LOC_Os06g40460
OsAffx.15860.1.S1_at--104--4551Chr06:24106604..24106628 (25 bp)
GCCCTCTTCACAACATACTTCAGAA
LOC_Os06g40460
OsAffx.15860.1.S1_at--279--9671Chr06:24106647..24106671 (25 bp)
TCAGCTGCTCAGGTCTTGGATAAAA
LOC_Os06g40460
Target Sequence 
TAGAGCTAAGGTGGACTTCAGCAAAGAGAACTACTTCCTCTGTTGTCACCAACATCCAGCATAATGGGCCTGCTACTGAT
AGTCATAGACATAGCAGCATCAACGATAGTGGTAGTGCTCAACAGGAAATTTCAGATGCAAATAAGGTTCTGGCTCCTCC
AAGCAGCTCCAATGCTGTGGAATCTAGTCCAAAGATAGAGAATAGTGGGACCAAGTCAATGCCCTCTTCACAACATACTT
CAGAATCTGACTCGGCAACCACATCAGCTGCTCAGGTCTTGGATAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15860.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis