Browse Element(s) Details


OsAffx.15875.1.S1_at

Description tigr:9634.m03975
TID=OsAffx.15875.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4132011/11transposon protein, putative, unclassified
LOC_Os04g229902/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g427402/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41300OsAffx.28039.2.S1_x_at11/116+24711512..24711883hypothetical protein
LOC_Os06g41310OsAffx.28040.1.S1_at11/116+24714861..24715433hypothetical protein
LOC_Os06g41320OsAffx.15875.1.S1_at11/116+24732921..24735919transposon protein, putative, unclassified
LOC_Os06g41320OsAffx.23566.1.S1_at1/116+24732921..24735919transposon protein, putative, unclassified
LOC_Os06g41330OsAffx.5075.1.S1_x_at11/116+24739377..24740424hypothetical protein
LOC_Os06g41330OsAffx.5075.1.S1_at10/116+24739377..24740424hypothetical protein
LOC_Os06g41340Os.28346.3.S1_x_at9/116+24750001..24760475retrotransposon protein, putative, unclassified
LOC_Os06g41340OsAffx.17950.1.S1_at8/116+24750001..24760475retrotransposon protein, putative, unclassified
LOC_Os06g41340Os.28346.1.S1_x_at5/116+24750001..24760475retrotransposon protein, putative, unclassified
LOC_Os06g41340Os.28346.5.S1_x_at1/116+24750001..24760475retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15875.1.S1_at--704--6751Chr06:24733434..24733453 (20 bp)
GTTACGCAATAAGAAGACCCAGGTC
LOC_Os06g41320
OsAffx.15875.1.S1_at--144--5811Chr06:24733419..24733443 (25 bp)
GACCCAGGTCTTCTTTAGATATAGC
LOC_Os06g41320
OsAffx.15875.1.S1_at--600--2491Chr06:24733355..24733379 (25 bp)
AACAGTCAATCACAGCTTGTCTATG
LOC_Os06g41320
OsAffx.15875.1.S1_at--43--5391Chr06:24733331..24733355 (25 bp)
GAAGCATTCGGTGACATGGTAATAT
LOC_Os06g41320
OsAffx.15875.1.S1_at--256--211Chr06:24733276..24733300 (25 bp)
ATATTCCATTTGTACCTTTTGTTGA
LOC_Os06g41320
OsAffx.15875.1.S1_at--265--2691Chr06:24733252..24733276 (25 bp)
AAGCTAACCATCATTGCAACACAAT
LOC_Os06g41320
OsAffx.15875.1.S1_at--656--192Chr10:22728918..22728937 (20 bp)
ATTTCTTCATATGTTTGGCTGTGGC
LOC_Os10g42740
OsAffx.15875.1.S1_at--830--10231Chr06:24733180..24733204 (25 bp)
TTTGGCTGTGGCAAACTCTTTTGGA
LOC_Os06g41320
OsAffx.15875.1.S1_at--486--2393Chr10:22728889..22728913 (25 bp)
AAACTCTTTTGGAGGCAATGCACCA
LOC_Os10g42740
OsAffx.15875.1.S1_at--285--10132Chr06:24733089..24733113 (25 bp)
TATGAAGGTTATGCCCAATACTGAT
LOC_Os06g41320
OsAffx.15875.1.S1_at--916--7091Chr06:24733024..24733048 (25 bp)
GTCACCTTCGTTGGCAAAAGCTTGC
LOC_Os06g41320
Target Sequence 
GTTACGCAATAAGAAGACCCAGGTCTTCTTTAGATATAGCATAAACAAAAAAGGGGCGTCTAAGGAATTTATTTTGACAA
ACAGTCAATCACAGCTTGTCTATGAAGCATTCGGTGACATGGTAATATTTGACAGTATATGTTGTGTGAACTGGTACAAT
ATTCCATTTGTACCTTTTGTTGAAGCTAACCATCATTGCAACACAATTATTTTTGGGTGTGGTATTTTGTCAAATGAGAC
AATTTCTTCATATGTTTGGCTGTGGCAAACTCTTTTGGAGGCAATGCACCAAAAACATCGAAAGTCATTGATCACTGACG
GGGATGCATCAACGGCGAAGGCAATTATGAAGGTTATGCCCAATACTGATAATAGATTGTGTAGTTGGCACATTGAGGAG
AATATGAAACGTCACCTTCGTTGGCAAAAGCTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15875.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis