Browse Element(s) Details


OsAffx.15898.1.S1_s_at

Description tigr:9634.m04121
TID=OsAffx.15898.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C3HC4 type (RING finger), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4270011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g42660Os.55280.1.S1_at11/116+25654527..25655227expressed protein
LOC_Os06g42670Os.47463.1.S1_x_at5/116+25663338..25664677transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g42670Os.14491.2.S1_x_at3/116+25663338..25664677transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g42680Os.3434.1.S1_a_at11/116+25669037..25670898Phytosulfokines 1 precursor, putative, expressed
LOC_Os06g42690NANA6+25675969..25676493bZIP transcription factor family protein, expressed
LOC_Os06g42700OsAffx.15898.1.S1_s_at11/116+25679949..25681202Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g42700Os.15524.1.S1_at10/116+25679949..25681202Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g42710OsAffx.2625.1.S1_at6/116+25683526..25687067transposon protein, putative, Mutator sub-class
LOC_Os06g42720Os.9832.1.S1_at11/116+25689382..25692908amino acid transporter family protein, putative, expressed
LOC_Os06g42730OsAffx.28068.1.S1_at11/116+25697744..25701600expressed protein
LOC_Os06g42730OsAffx.28068.1.S1_x_at11/116+25697744..25701600expressed protein
LOC_Os06g42730Os.23051.1.A1_at5/116+25697744..25701600expressed protein
LOC_Os06g42740OsAffx.15899.1.S1_at11/116+25703044..25704021hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016567biological_processprotein ubiquitination
GO:0005737cellular_componentcytoplasm
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15898.1.S1_s_at--871--1591Chr06:25680343..25680367 (25 bp)
AGCTGCCGTGCGCGCACTTGTACCA
LOC_Os06g42700
OsAffx.15898.1.S1_s_at--76--7551Chr06:25680300..25680324 (25 bp)
GTGGCTCGCCATCCGGAACTCGTGT
LOC_Os06g42700
OsAffx.15898.1.S1_s_at--578--531Chr06:25680290..25680314 (25 bp)
ATCCGGAACTCGTGTCCGGTGTGCC
LOC_Os06g42700
OsAffx.15898.1.S1_s_at--266--2071Chr06:25680284..25680308 (25 bp)
AACTCGTGTCCGGTGTGCCGTTACG
LOC_Os06g42700
OsAffx.15898.1.S1_s_at--615--9411Chr06:25680281..25680305 (25 bp)
TCGTGTCCGGTGTGCCGTTACGAGC
LOC_Os06g42700
OsAffx.15898.1.S1_s_at--663--7251Chr06:25680277..25680301 (25 bp)
GTCCGGTGTGCCGTTACGAGCTGCC
LOC_Os06g42700
OsAffx.15898.1.S1_s_at--1134--3971Chr06:25680274..25680298 (25 bp)
CGGTGTGCCGTTACGAGCTGCCCAC
LOC_Os06g42700
OsAffx.15898.1.S1_s_at--969--8671Chr06:25680271..25680295 (25 bp)
TGTGCCGTTACGAGCTGCCCACCGA
LOC_Os06g42700
OsAffx.15898.1.S1_s_at--1058--7351Chr06:25680221..25680245 (25 bp)
GTGAAGCGGCGTTCTTCTGGTGACT
LOC_Os06g42700
OsAffx.15898.1.S1_s_at--1086--5371Chr06:25680219..25680243 (25 bp)
GAAGCGGCGTTCTTCTGGTGACTCC
LOC_Os06g42700
OsAffx.15898.1.S1_s_at--1147--4691Chr06:25680216..25680240 (25 bp)
GCGGCGTTCTTCTGGTGACTCCGTG
LOC_Os06g42700
Target Sequence 
AGCTGCCGTGCGCGCACTTGTACCACGGGGCGTGCATCGAACCGTGGCTCGCCATCCGGAACTCGTGTCCGGTGTGCCGT
TACGAGCTGCCCACCGATGACCCCGAGTACGAGAAGCGGCGGGTGAAGCGGCGTTCTTCTGGTGACTCCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15898.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis