Browse Element(s) Details


OsAffx.1594.1.S1_at

Description gb:NM_185217.1
DB_XREF= gi:34897519
TID=OsAffx.1594.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0043P23.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6288011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62830OsAffx.13589.1.S1_at11/113+35482857..35485781hypothetical protein
LOC_Os03g62840OsAffx.13590.1.S1_at11/113+35486614..35487177hypothetical protein
LOC_Os03g62850Os.20160.1.S1_at11/113+35488114..35496981AMP-binding protein, putative, expressed
LOC_Os03g62860Os.29814.1.S1_at11/113+35497637..35500113Glycosyl hydrolases family 17 protein, expressed
LOC_Os03g62870Os.14847.1.S1_at11/113+35501850..35504003RNA polymerase Rpb8 family protein, expressed
LOC_Os03g62880OsAffx.1594.1.S1_at11/113+35510622..35511544hypothetical protein
LOC_Os03g62900OsAffx.25801.1.S1_at11/113+35522435..35525874hypothetical protein
LOC_Os03g62910Os.23707.1.S1_at11/113+35528696..35535002expressed protein
LOC_Os03g62910Os.23707.2.S1_at4/113+35528696..35535002expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1594.1.S1_at--308--7571Chr03:35511469..35511493 (25 bp)
GGGCCCCACATATGCGCCATTGAGG
LOC_Os03g62880
OsAffx.1594.1.S1_at--173--8511Chr03:35511387..35511411 (25 bp)
TGGCAGCGGGCAGTGCTCTTCTTCA
LOC_Os03g62880
OsAffx.1594.1.S1_at--1010--9552Chr04:27633610..27633634 (25 bp)
TCTTCTTCAGCGAGCCTGGGAGGCC
NONE
OsAffx.1594.1.S1_at--119--8211Chr03:35510993..35511017 (25 bp)
GGAAGGCCGACTGTGTCTAGGAACT
LOC_Os03g62880
OsAffx.1594.1.S1_at--996--1351Chr03:35510965..35510989 (25 bp)
AGAGACCGAGCCAGAGGCGACATAG
LOC_Os03g62880
OsAffx.1594.1.S1_at--1024--8171Chr03:35510914..35510938 (25 bp)
GGAACCCCACTCAATGTGCCAGGAT
LOC_Os03g62880
OsAffx.1594.1.S1_at--1--2991Chr03:35510902..35510926 (25 bp)
AATGTGCCAGGATCCATTCACGATG
LOC_Os03g62880
OsAffx.1594.1.S1_at--286--131Chr03:35510887..35510911 (25 bp)
ATTCACGATGGCGAGTTCACCCAAC
LOC_Os03g62880
OsAffx.1594.1.S1_at--168--2651Chr03:35510840..35510864 (25 bp)
AACCAGGACGCGACGATGTCAGGAT
LOC_Os03g62880
OsAffx.1594.1.S1_at--1065--1871Chr03:35510828..35510852 (25 bp)
ACGATGTCAGGATCCACGGAGGCCA
LOC_Os03g62880
OsAffx.1594.1.S1_at--750--3831Chr03:35510749..35510773 (25 bp)
CTGCGGTGACAACGCTCGGAGCAAA
LOC_Os03g62880
Target Sequence 
GGGCCCCACATATGCGCCATTGAGGCGTTAATAGACGGGGACGGAGCGGCGGCGGGTGAGCGCGGTAGTGGGCCTGGGAG
GCTGGCAGCGGGCAGTGCTCTTCTTCAGCGAGCCTGGGAGGCCGGCGGCGGATGGAGCGTTGGTGGGTTAACAAAGGCTG
GAGGAAGGCCGACTGTGTCTAGGAACTGGCAGAGACCGAGCCAGAGGCGACATAGGGAGGCACAGCCGAGGAGATCGATG
GGGAACCCCACTCAATGTGCCAGGATCCATTCACGATGGCGAGTTCACCCAACCTCCTTGGAGGCGAGGAAGGCGAACCA
GGACGCGACGATGTCAGGATCCACGGAGGCCAGGTGCGCGGAGGCAAGGCGCGTCGAGGCGACTGGGCCCAAGTGGGAGG
CTAGCGCTGCGGTGACAACGCTCGGAGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1594.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis