Browse Element(s) Details


OsAffx.15964.1.S1_at

Description tigr:9634.m04589
TID=OsAffx.15964.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BT005903 At4g16120
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4711011/11COBRA-like protein 11 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47050OsAffx.28143.1.S1_at10/116+28525553..28528215hypothetical protein
LOC_Os06g47060OsAffx.15962.1.S1_at11/116+28530612..28532532hypothetical protein
LOC_Os06g47060OsAffx.19489.2.S1_at2/116+28530612..28532532hypothetical protein
LOC_Os06g47060OsAffx.19489.2.S1_x_at1/116+28530612..28532532hypothetical protein
LOC_Os06g47070OsAffx.30013.1.S1_x_at2/116+28537704..28538273hypothetical protein
LOC_Os06g47080OsAffx.828.1.S1_x_at1/116+28539405..28540139retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g47090OsAffx.30013.5.S1_x_at11/116+28541584..28542121hypothetical protein
LOC_Os06g47090Os.56292.1.S1_x_at3/116+28541584..28542121hypothetical protein
LOC_Os06g47090Os.56292.1.S1_at1/116+28541584..28542121hypothetical protein
LOC_Os06g47090OsAffx.30013.1.S1_x_at1/116+28541584..28542121hypothetical protein
LOC_Os06g47100OsAffx.15963.1.S1_at11/116+28546658..28548833F-box domain containing protein, expressed
LOC_Os06g47110OsAffx.15964.1.S1_at11/116+28550662..28552713COBRA-like protein 11 precursor, putative, expressed
LOC_Os06g47120OsAffx.28145.1.S1_at11/116+28554885..28556849hypothetical protein
LOC_Os06g47130OsAffx.5133.1.S1_at11/116+28557353..28563764C2 domain-containing protein, putative, expressed
LOC_Os06g47130Os.11931.1.S1_s_at11/116+28557353..28563764C2 domain-containing protein, putative, expressed
LOC_Os06g47130Os.31991.1.S1_at2/116+28557353..28563764C2 domain-containing protein, putative, expressed
LOC_Os06g47140NANA6+28576702..28578098hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15964.1.S1_at--444--9671Chr06:28552205..28552229 (25 bp)
TCAGCGTCAACTGGCACATCATGAA
LOC_Os06g47110
OsAffx.15964.1.S1_at--499--5511Chr06:28552227..28552251 (25 bp)
GAACAACTACAAGTCCGGGTGGGCG
LOC_Os06g47110
OsAffx.15964.1.S1_at--682--8491Chr06:28552273..28552297 (25 bp)
TGGCAGGACTACACGTTCAAGGACT
LOC_Os06g47110
OsAffx.15964.1.S1_at--661--4611Chr06:28552319..28552343 (25 bp)
GCGACCACTACAGCGGCTACGAGAA
LOC_Os06g47110
OsAffx.15964.1.S1_at--843--4851Chr06:28552334..28552358 (25 bp)
GCTACGAGAACGTCTACTCCTTCAA
LOC_Os06g47110
OsAffx.15964.1.S1_at--330--7131Chr06:28552489..28552513 (25 bp)
GTCATCTCCTTCTCGCGGAAGGACG
LOC_Os06g47110
OsAffx.15964.1.S1_at--874--5291Chr06:28552506..28552530 (25 bp)
GAAGGACGCGCCGAACGTCAACATT
LOC_Os06g47110
OsAffx.15964.1.S1_at--620--8191Chr06:28552539..28552563 (25 bp)
GGAAGGCTTCCCCAAGAGGCTCTAC
LOC_Os06g47110
OsAffx.15964.1.S1_at--145--8151Chr06:28552590..28552614 (25 bp)
GGACACGATACCCAAGCCGTCGAGC
LOC_Os06g47110
OsAffx.15964.1.S1_at--1123--4271Chr06:28552644..28552668 (25 bp)
CCTCGGGCAGATTGTCATGGCAGTA
LOC_Os06g47110
OsAffx.15964.1.S1_at--1007--3491Chr06:28552659..28552683 (25 bp)
CATGGCAGTAGTGCTTGTGATGGTT
LOC_Os06g47110
Target Sequence 
TCAGCGTCAACTGGCACATCATGAACAACTACAAGTCCGGGTGGGCGGCGCGGATCACCATCTTCAACTGGCAGGACTAC
ACGTTCAAGGACTGGTTCGCCGCCGTCACCATGCGCGACCACTACAGCGGCTACGAGAACGTCTACTCCTTCAACGGCAC
CAAGATGGGGGCGCCGTTCAACAACAGCATCTTCATGCAGGGGTTGCCCGGGCTCACCTACCTCGAGCCGATCACCGACG
GGAGGACGCCGGAGGACCCAAGGGTGCCCGGGAAGCAGCAGTCCGTCATCTCCTTCTCGCGGAAGGACGCGCCGAACGTC
AACATTGCCAAGGGGGAAGGCTTCCCCAAGAGGCTCTACTTCGACGGCGAGGAGTGCGCGCTCCCGGACACGATACCCAA
GCCGTCGAGCGCGCACCGGCGGGCCGCCGCGGCGGCGAGCCTCGGGCAGATTGTCATGGCAGTAGTGCTTGTGATGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15964.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis