Browse Element(s) Details


OsAffx.5133.1.S1_at

Description tigr:9634.m04591
TID=OsAffx.5133.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=synaptotagmin C
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4713011/11C2 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47060OsAffx.15962.1.S1_at11/116+28530612..28532532hypothetical protein
LOC_Os06g47060OsAffx.19489.2.S1_at2/116+28530612..28532532hypothetical protein
LOC_Os06g47060OsAffx.19489.2.S1_x_at1/116+28530612..28532532hypothetical protein
LOC_Os06g47070OsAffx.30013.1.S1_x_at2/116+28537704..28538273hypothetical protein
LOC_Os06g47080OsAffx.828.1.S1_x_at1/116+28539405..28540139retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g47090OsAffx.30013.5.S1_x_at11/116+28541584..28542121hypothetical protein
LOC_Os06g47090Os.56292.1.S1_x_at3/116+28541584..28542121hypothetical protein
LOC_Os06g47090Os.56292.1.S1_at1/116+28541584..28542121hypothetical protein
LOC_Os06g47090OsAffx.30013.1.S1_x_at1/116+28541584..28542121hypothetical protein
LOC_Os06g47100OsAffx.15963.1.S1_at11/116+28546658..28548833F-box domain containing protein, expressed
LOC_Os06g47110OsAffx.15964.1.S1_at11/116+28550662..28552713COBRA-like protein 11 precursor, putative, expressed
LOC_Os06g47120OsAffx.28145.1.S1_at11/116+28554885..28556849hypothetical protein
LOC_Os06g47130OsAffx.5133.1.S1_at11/116+28557353..28563764C2 domain-containing protein, putative, expressed
LOC_Os06g47130Os.11931.1.S1_s_at11/116+28557353..28563764C2 domain-containing protein, putative, expressed
LOC_Os06g47130Os.31991.1.S1_at2/116+28557353..28563764C2 domain-containing protein, putative, expressed
LOC_Os06g47140NANA6+28576702..28578098hypothetical protein
LOC_Os06g47150Os.22735.1.S1_at11/116+28585494..28589262Auxin response factor 16, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5133.1.S1_at--890--4891Chr06:28562578..28562696 (25 bp)
GCTTCCCTTCCGCAATAAGGAATCA
LOC_Os06g47130
OsAffx.5133.1.S1_at--627--10651Chr06:28562580..28562759 (25 bp)
TTCCCTTCCGCAATAAGGAATCATT
LOC_Os06g47130
OsAffx.5133.1.S1_at--514--4311Chr06:28562583..28562762 (25 bp)
CCTTCCGCAATAAGGAATCATTGGG
LOC_Os06g47130
OsAffx.5133.1.S1_at--805--3791Chr06:28563001..28563025 (25 bp)
CTCGCTCTTTTCGTGATCCATTTTG
LOC_Os06g47130
OsAffx.5133.1.S1_at--1090--9331Chr06:28563002..28563026 (25 bp)
TCGCTCTTTTCGTGATCCATTTTGG
LOC_Os06g47130
OsAffx.5133.1.S1_at--809--4111Chr06:28563003..28563027 (25 bp)
CGCTCTTTTCGTGATCCATTTTGGG
LOC_Os06g47130
OsAffx.5133.1.S1_at--70--3771Chr06:28563005..28563029 (25 bp)
CTCTTTTCGTGATCCATTTTGGGCG
LOC_Os06g47130
OsAffx.5133.1.S1_at--1009--9551Chr06:28563006..28563030 (25 bp)
TCTTTTCGTGATCCATTTTGGGCGC
LOC_Os06g47130
OsAffx.5133.1.S1_at--666--3671Chr06:28563007..28563031 (25 bp)
CTTTTCGTGATCCATTTTGGGCGCT
LOC_Os06g47130
OsAffx.5133.1.S1_at--543--10311Chr06:28563009..28563033 (25 bp)
TTTCGTGATCCATTTTGGGCGCTTT
LOC_Os06g47130
OsAffx.5133.1.S1_at--82--9431Chr06:28563011..28563035 (25 bp)
TCGTGATCCATTTTGGGCGCTTTTT
LOC_Os06g47130
Target Sequence 
GCTTCCCTTCCGCAATAAGGAATCATTGGGGCATGTGGATATAAACCTAGTGGACGTCGTGAACAACGGACGGATCAACG
AAAAATACCATCTGATCAACTCGAGGAACGGGATGGTACACGTCGAGATGAAATGGAGCACTGTATGACAATGATTCGGT
ATTCTGAAGAGTCTCACCTGTATGATTATACCTGTCGCTGTACATATACAGTCGCCATACTCCGTGTGGGCCATGTATGT
TGTAACTTTAGCCCTAATCCTCTACTCTCTCGCTCTTTTCGTGATCCATTTTGGGCGCTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5133.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis