Browse Element(s) Details


OsAffx.15991.1.S1_at

Description tigr:9634.m04778
TID=OsAffx.15991.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to At1g78995
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4907011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49020Os.49860.1.S1_at11/116+29710344..2971161726S proteasome non-ATPase regulatory subunit 14, putative, expressed
LOC_Os06g49030Os.11089.1.S1_at11/116+29712471..29715990expressed protein
LOC_Os06g49040Os.5279.1.S1_at11/116+29722468..29726091myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os06g49050Os.53611.1.S1_at11/116+29726337..29730922hAT dimerisation domain-containing protein, putative, expressed
LOC_Os06g49060Os.54378.1.S1_at11/116+29732807..29736190ternary complex factor MIP1, putative, expressed
LOC_Os06g49070OsAffx.15991.1.S1_at11/116+29736486..29737309expressed protein
LOC_Os06g49080Os.54886.1.S1_at11/116+29737882..29741501Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os06g49090Os.8048.1.S1_at11/116+29743318..29749634transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g49090Os.54886.1.S1_at2/116+29743318..29749634transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g49100OsAffx.28180.1.S1_s_at11/116+29753547..29755379leucine-rich repeat family protein, putative, expressed
LOC_Os06g49100Os.54530.1.S1_x_at11/116+29753547..29755379leucine-rich repeat family protein, putative, expressed
LOC_Os06g49100Os.54530.1.S1_at11/116+29753547..29755379leucine-rich repeat family protein, putative, expressed
LOC_Os06g49110OsAffx.15992.1.S1_at11/116+29756047..29760821Delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed
LOC_Os06g49110Os.7836.1.S1_s_at10/116+29756047..29760821Delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed
LOC_Os06g49120Os.26393.1.S1_at11/116+29761521..29765747NmrA-like family protein, expressed
LOC_Os06g49120OsAffx.15993.1.S1_at11/116+29761521..29765747NmrA-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15991.1.S1_at--590--1031Chr06:29737048..29737072 (25 bp)
AGGTGAGGATAAAGCGGCCCAAGTC
LOC_Os06g49070
OsAffx.15991.1.S1_at--584--2951Chr06:29737019..29737043 (25 bp)
AAGGCGCTGCAGTGCACCTCCAAGT
LOC_Os06g49070
OsAffx.15991.1.S1_at--266--3751Chr06:29736837..29736983 (25 bp)
CTCAACGCCTCTGGTAGTTTTCAAG
LOC_Os06g49070
OsAffx.15991.1.S1_at--884--10371Chr06:29736820..29736844 (25 bp)
TTTTCAAGGGACAATTCCGCAGCCG
LOC_Os06g49070
OsAffx.15991.1.S1_at--940--7611Chr06:29736813..29736837 (25 bp)
GGGACAATTCCGCAGCCGGCAGTAC
LOC_Os06g49070
OsAffx.15991.1.S1_at--966--1671Chr06:29736679..29736824 (25 bp)
AGCCGGCAGTACTGAGTGCTCGGAT
LOC_Os06g49070
OsAffx.15991.1.S1_at--201--7011Chr06:29736671..29736751 (25 bp)
GTACTGAGTGCTCGGATGTCTGCAA
LOC_Os06g49070
OsAffx.15991.1.S1_at--181--1131Chr06:29736665..29736689 (25 bp)
AGTGCTCGGATGTCTGCAATCTCAT
LOC_Os06g49070
OsAffx.15991.1.S1_at--739--9431Chr06:29736660..29736684 (25 bp)
TCGGATGTCTGCAATCTCATCAAGG
LOC_Os06g49070
OsAffx.15991.1.S1_at--1036--791Chr06:29736626..29736650 (25 bp)
ATGGGCAATGAGGAAAGCTTTGACA
LOC_Os06g49070
OsAffx.15991.1.S1_at--447--5391Chr06:29736519..29736621 (25 bp)
GAAGCAGCAGCAATTCAAACCAAGG
LOC_Os06g49070
Target Sequence 
AGGTGAGGATAAAGCGGCCCAAGTCGGCGAAGGCGCTGCAGTGCACCTCCAAGTGCGTCGCCACCTGCATCCGCGGCGGC
GAGGGCCCCCTCAACGCCTCTGGTAGTTTTCAAGGGACAATTCCGCAGCCGGCAGTACTGAGTGCTCGGATGTCTGCAAT
CTCATCAAGGATGGAGAAGATGGGCAATGAGGAAAGCTTTGACAAGGAGAAGCAGCAGCAATTCAAACCAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15991.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis