Browse Element(s) Details


OsAffx.16042.1.S1_at

Description gb:NM_194118.1
DB_XREF= gi:34915273
GEN=OJ1118_G09.21
TID=OsAffx.16042.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (OJ1118_G09.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0224011/11transcription factor X1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02180NANA7+691715..6932053'-5' exonuclease family protein, expressed
LOC_Os07g02190OsAffx.25643.1.S1_at1/117+697018..697329hypothetical protein
LOC_Os07g02200Os.7393.1.S1_at11/117+698177..699125Plastocyanin-like domain containing protein, expressed
LOC_Os07g02210Os.5400.1.S1_at11/117+701316..703801Eukaryotic translation initiation factor 5A-1/2, putative, expressed
LOC_Os07g02230OsAffx.30397.3.S1_x_at11/117+705311..716673hypothetical protein
LOC_Os07g02230OsAffx.28232.1.A1_at10/117+705311..716673hypothetical protein
LOC_Os07g02230OsAffx.30397.1.S1_x_at9/117+705311..716673hypothetical protein
LOC_Os07g02230OsAffx.30397.2.S1_at6/117+705311..716673hypothetical protein
LOC_Os07g02240OsAffx.16042.1.S1_at11/117+716901..718126transcription factor X1, putative
LOC_Os07g02250Os.30485.1.S1_at11/117+721178..724795expressed protein
LOC_Os07g02260OsAffx.8843.1.S1_at11/117+724976..725668expressed protein
LOC_Os07g02270OsAffx.16043.1.S1_at11/117+734314..737018hypothetical protein
LOC_Os07g02280OsAffx.21080.1.S1_at11/117+741230..743134pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16042.1.S1_at--731--5151Chr07:717915..717939 (25 bp)
GCAACGGCGCTTACTGGCAGAGGCT
LOC_Os07g02240
OsAffx.16042.1.S1_at--279--5371Chr07:717806..717830 (25 bp)
GAAGAAGCTCAACCAAGACGACGAC
LOC_Os07g02240
OsAffx.16042.1.S1_at--974--911Chr07:717726..717750 (25 bp)
AGGCTCCGGCGATCAACGATGAGTT
LOC_Os07g02240
OsAffx.16042.1.S1_at--70--2591Chr07:717712..717736 (25 bp)
AACGATGAGTTGCAGGCCATCCGCA
LOC_Os07g02240
OsAffx.16042.1.S1_at--963--3211Chr07:717359..717383 (25 bp)
CAAGTGGCCGCGCAAGCATTGGCAT
LOC_Os07g02240
OsAffx.16042.1.S1_at--23--4931Chr07:717294..717318 (25 bp)
GCTTGCACACAAACACTGACTAAAA
LOC_Os07g02240
OsAffx.16042.1.S1_at--326--8831Chr07:717262..717286 (25 bp)
TGATTCTGCGCTTCTCTATTCAAAG
LOC_Os07g02240
OsAffx.16042.1.S1_at--1096--8951Chr07:717229..717253 (25 bp)
TGAAATCAGCGACTCATCCTGGCAC
LOC_Os07g02240
OsAffx.16042.1.S1_at--582--8491Chr07:717210..717234 (25 bp)
TGGCACCCTTTCAGGGTCATCAACA
LOC_Os07g02240
OsAffx.16042.1.S1_at--169--10292Chr07:716959..716983 (25 bp)
TTTGCCCGAGCCAACTGTTCAGAGT
LOC_Os07g02240
OsAffx.16042.1.S1_at--420--6072Chr07:716938..716962 (25 bp)
GAGTTCATTGCCATGCTATCGCAGA
LOC_Os07g02240
Target Sequence 
GCAACGGCGCTTACTGGCAGAGGCTCATCTGGGCGCAGAACCCGGATCTCTTTGCGCCGCCGCCGCCGCCGGCGGTGAGC
AAGAAGATGCAGGGGATCGCCGCGACGTCGAAGAAGCTCAACCAAGACGACGACGACGACACCAAGAGCAAGATGACCGA
TGAAATGCCGGCAATGGAGTCGCTCAACCAGGCTCCGGCGATCAACGATGAGTTGCAGGCCATCCGCAAACAGCTCATAC
ATGCTTTGGAGGAGCTGACAAGTGGCCGCGCAAGCATTGGCATCAGGAGGATGGGTGAGCTTGATCCAAAAGCATTTGCT
AATGCTTGCACACAAACACTGACTAAAAAACAGCTTGATTCTGCGCTTCTCTATTCAAAGTGGGAAGCTGAAATCAGCGA
CTCATCCTGGCACCCTTTCAGGGTCATCAACATCAATGGAAAAAACAAGCTTTGCCCGAGCCAACTGTTCAGAGTTCATT
GCCATGCTATCGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16042.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis