Browse Element(s) Details


OsAffx.16043.1.S1_at

Description tigr:9635.m00133
TID=OsAffx.16043.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0227011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02230OsAffx.30397.3.S1_x_at11/117+705311..716673hypothetical protein
LOC_Os07g02230OsAffx.28232.1.A1_at10/117+705311..716673hypothetical protein
LOC_Os07g02230OsAffx.30397.1.S1_x_at9/117+705311..716673hypothetical protein
LOC_Os07g02230OsAffx.30397.2.S1_at6/117+705311..716673hypothetical protein
LOC_Os07g02240OsAffx.16042.1.S1_at11/117+716901..718126transcription factor X1, putative
LOC_Os07g02250Os.30485.1.S1_at11/117+721178..724795expressed protein
LOC_Os07g02260OsAffx.8843.1.S1_at11/117+724976..725668expressed protein
LOC_Os07g02270OsAffx.16043.1.S1_at11/117+734314..737018hypothetical protein
LOC_Os07g02280OsAffx.21080.1.S1_at11/117+741230..743134pentatricopeptide, putative, expressed
LOC_Os07g02290OsAffx.16045.1.S1_at11/117+747870..751388F-box domain containing protein
LOC_Os07g02300Os.27537.1.S1_at11/117+751972..761671TPR Domain containing protein, expressed
LOC_Os07g02300OsAffx.31868.1.S1_at2/117+751972..761671TPR Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16043.1.S1_at--510--7451Chr07:734353..734377 (25 bp)
GTGTCACCGAAAGCGCGGCACATGA
LOC_Os07g02270
OsAffx.16043.1.S1_at--568--6131Chr07:734387..734411 (25 bp)
GAGGGCGAGGCCTCGACATCTCTGA
LOC_Os07g02270
OsAffx.16043.1.S1_at--206--8911Chr07:734409..734433 (25 bp)
TGAGCCTAATGGACCTCTCGATAGC
LOC_Os07g02270
OsAffx.16043.1.S1_at--573--9511Chr07:734424..734448 (25 bp)
TCTCGATAGCTACATCCGGAAGTTG
LOC_Os07g02270
OsAffx.16043.1.S1_at--1106--10091Chr07:736464..736487 (24 bp)
TATGGTGAAACAAAGCTCCGAGAGC
LOC_Os07g02270
OsAffx.16043.1.S1_at--266--4231Chr07:736481..736846 (25 bp)
CCGAGAGCCTGATCTTTAAGCGCAA
LOC_Os07g02270
OsAffx.16043.1.S1_at--892--1451Chr07:736849..736873 (25 bp)
AGAAGATGGGCACACACAACATGCA
LOC_Os07g02270
OsAffx.16043.1.S1_at--563--5311Chr07:736883..736907 (25 bp)
GAAGGTTGCTGGCATCACTAGTTCC
LOC_Os07g02270
OsAffx.16043.1.S1_at--447--4971Chr07:736894..736918 (25 bp)
GCATCACTAGTTCCGCGTTCTTGTT
LOC_Os07g02270
OsAffx.16043.1.S1_at--507--6731Chr07:736910..736934 (25 bp)
GTTCTTGTTCGGGACAGCATTCATT
LOC_Os07g02270
OsAffx.16043.1.S1_at--216--5631Chr07:736922..736946 (25 bp)
GACAGCATTCATTTCCCTTTTTGCA
LOC_Os07g02270
Target Sequence 
GTGTCACCGAAAGCGCGGCACATGAACAGCGGGCGAGGGCGAGGCCTCGACATCTCTGAGCCTAATGGACCTCTCGATAG
CTACATCCGGAAGTTGATGGATGCAGGAAACCTGGAGGAAATAAACAGAATAGGGAAGATTTTGTCAAAAAGGGATATGG
TGAAACAAAGCTCCGAGAGCCTGATCTTTAAGCGCAAGAAGAAGATGGGCACACACAACATGCAAGATATGTGGAAGGTT
GCTGGCATCACTAGTTCCGCGTTCTTGTTCGGGACAGCATTCATTTCCCTTTTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16043.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis