Browse Element(s) Details


OsAffx.16085.1.S1_at

Description tigr:9635.m00397
TID=OsAffx.16085.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ABC transporter, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0466011/11ABC transporter family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04590OsAffx.28270.2.S1_at11/117+2040785..2042485hypothetical protein
LOC_Os07g04600OsAffx.5211.1.S1_at11/117+2044857..2047490hypothetical protein
LOC_Os07g04610OsAffx.16083.1.S1_at11/117+2048397..2049157hypothetical protein
LOC_Os07g04620OsAffx.28265.1.S1_at11/117+2050708..2051394hypothetical protein
LOC_Os07g04630NANA7+2052778..2053215hypothetical protein
LOC_Os07g04650OsAffx.28267.1.S1_at11/117+2060481..2062147Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os07g04660OsAffx.16085.1.S1_at11/117+2063509..2064003ABC transporter family protein, putative
LOC_Os07g04670OsAffx.28268.1.S1_at11/117+2065644..2066474hypothetical protein
LOC_Os07g04690Os.11609.1.S1_at11/117+2078300..2081827UDP-glucose 4-epimerase family protein, expressed
LOC_Os07g04700Os.49202.1.S1_at11/117+2082409..2089950Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g04700Os.24362.1.A1_at11/117+2082409..2089950Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g04700Os.54102.1.S1_x_at1/117+2082409..2089950Myb-like DNA-binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16085.1.S1_at--378--8091Chr07:2063923..2063947 (25 bp)
GGAGCGCCACATCCACATCCGGGAT
LOC_Os07g04660
OsAffx.16085.1.S1_at--90--4411Chr07:2063918..2063942 (25 bp)
GCCACATCCACATCCGGGATCGAGA
LOC_Os07g04660
OsAffx.16085.1.S1_at--1003--9271Chr07:2063906..2063930 (25 bp)
TCCGGGATCGAGACAGCCCACAACG
LOC_Os07g04660
OsAffx.16085.1.S1_at--623--7191Chr07:2063718..2063742 (25 bp)
GTCGGGTTGTCGAAGGCCGTGAAGA
LOC_Os07g04660
OsAffx.16085.1.S1_at--59--5351Chr07:2063698..2063722 (25 bp)
GAAGATGTCGGTGATGGACGCCAAT
LOC_Os07g04660
OsAffx.16085.1.S1_at--777--8711Chr07:2063693..2063717 (25 bp)
TGTCGGTGATGGACGCCAATCAGGC
LOC_Os07g04660
OsAffx.16085.1.S1_at--786--6231Chr07:2063686..2063710 (25 bp)
GATGGACGCCAATCAGGCGTACGCT
LOC_Os07g04660
OsAffx.16085.1.S1_at--466--411Chr07:2063675..2063699 (25 bp)
ATCAGGCGTACGCTCGGCACCACTT
LOC_Os07g04660
OsAffx.16085.1.S1_at--1108--3991Chr07:2063669..2063693 (25 bp)
CGTACGCTCGGCACCACTTTGACGG
LOC_Os07g04660
OsAffx.16085.1.S1_at--33--2051Chr07:2063654..2063678 (25 bp)
ACTTTGACGGCGGACACCTGCGTGG
LOC_Os07g04660
OsAffx.16085.1.S1_at--274--3411Chr07:2063607..2063631 (25 bp)
CAGCAGGCTGGGATGGATATCGGCA
LOC_Os07g04660
Target Sequence 
GGAGCGCCACATCCACATCCGGGATCGAGACAGCCCACAACGCCTACCGCCGCCTCTCCTACGTGATCGCCAACACCGCC
GTCGCGTTCCCGCCGCTGGTGTCCCTGTCGCTGGCGTTCGCGGCGACCACGTTCTTCGCCGTCGGTCTCTCCGGTGGCGG
TGCTGCTTCTCCCGTGGCGTCGAGATGTTCGACGGCACGCCGATCGTCGGGTTGTCGAAGGCCGTGAAGATGTCGGTGAT
GGACGCCAATCAGGCGTACGCTCGGCACCACTTTGACGGCGGACACCTGCGTGGTGACCGCGCCGACGTGCTGGCGCAGC
AGGCTGGGATGGATATCGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16085.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis