Browse Element(s) Details


OsAffx.16092.1.S1_at

Description tigr:9635.m00443
TID=OsAffx.16092.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0510011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05050Os.38341.1.S1_at11/117+2223931..2229407DEAD/DEAH box helicase family protein, expressed
LOC_Os07g05050Os.38341.1.S1_x_at11/117+2223931..2229407DEAD/DEAH box helicase family protein, expressed
LOC_Os07g05060Os.35959.1.S1_at10/117+2230274..2232730expressed protein
LOC_Os07g05070OsAffx.28278.1.S1_at10/117+2233716..2234318hypothetical protein
LOC_Os07g05084OsAffx.1499.1.S1_at11/117+2241974..2243857expressed protein
LOC_Os07g05100OsAffx.16092.1.S1_at11/117+2251212..2252853hypothetical protein
LOC_Os07g05110Os.18494.1.S1_at10/117+2255620..2257435Patatin-like phospholipase family protein, expressed
LOC_Os07g05120OsAffx.28280.1.S1_at11/117+2257844..2259856hypothetical protein
LOC_Os07g05140OsAffx.29313.1.S1_at1/117+2267989..2272456transposon protein, putative, Mutator sub-class
LOC_Os07g05140Os.56216.1.S1_at1/117+2267989..2272456transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16092.1.S1_at--293--8971Chr07:2252412..2252436 (25 bp)
TGAAATGAGATCCTGCCCACGAAGA
LOC_Os07g05100
OsAffx.16092.1.S1_at--1046--5172Chr04:991555..991576 (22 bp)
GCAAGGTTGTGGATGCCAAGTCCCC
NONE
OsAffx.16092.1.S1_at--896--2951Chr07:2251740..2251764 (25 bp)
AATGGCGCGCAGACTCGGGACCAAG
LOC_Os07g05100
OsAffx.16092.1.S1_at--574--91Chr07:2251690..2251714 (25 bp)
ATTCGCACGACCATACCAGAGGAAG
LOC_Os07g05100
OsAffx.16092.1.S1_at--597--6191Chr07:2251672..2251696 (25 bp)
GAGGAAGCACGACCATACCAGAGGA
LOC_Os07g05100
OsAffx.16092.1.S1_at--391--1331Chr07:2251653..2251677 (25 bp)
AGAGGAAGCCGCGTCATATCTTGTC
LOC_Os07g05100
OsAffx.16092.1.S1_at--628--233Chr04:991668..991691 (24 bp)
ATATCTTGTCGATGGCTTTCAGCAC
NONE
OsAffx.16092.1.S1_at--887--4992Chr04:991887..991911 (25 bp)
GCATGGGAACTCCTCAACTGGGCAG
NONE
OsAffx.16092.1.S1_at--1157--5291Chr07:2251391..2251415 (25 bp)
GAAGGAGTTACCAAGTACTGCGACC
LOC_Os07g05100
OsAffx.16092.1.S1_at--878--993Chr04:992020..992044 (25 bp)
AGGATCCCTTGTGCTGCAGCAAGTT
NONE
OsAffx.16092.1.S1_at--56--8211Chr07:2251242..2251266 (25 bp)
GGAATGCCTCTCAATTGCAGCTGAA
LOC_Os07g05100
Target Sequence 
TGAAATGAGATCCTGCCCACGAAGAGGGCAAGGTTGTGGATGCCAAGTCCCCCATATTCCAATGGCGCGCAGACTCGGGA
CCAAGCCAGCCGGTAGTGGCCACCCTGAGCATTCGCACGACCATACCAGAGGAAGCACGACCATACCAGAGGAAGCCGCG
TCATATCTTGTCGATGGCTTTCAGCACCCATTTTGGGGGGGCAATGGCGATGAGCAGCGGCAGCCGCTGCGCAATCCTAT
CGACCAGAGGTTGGAGGCCCTCACGACACAGCTTTCTGATGGAAAGAGTCAAACCCAAATATTTGCATGGGAACTCCTCA
ACTGGGCAGGGGAAGGAGTTACCAAGTACTGCGACCTCTTCCTCCGAGCAGCTGATCGGGATCGCGGAGCATTTGGTGAA
GTTGGTATGAAGACCAGAGGCCTCTCCAAAGAGAGCAAGGATCCCTTGTGCTGCAGCAAGTTCCCCAGCGACCGGCCGGA
GGAATGCCTCTCAATTGCAGCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16092.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis